For researchers

Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data.

wu-yc/LabClaw

Analyze spatial transcriptomics data to map gene expression in tissue architecture.

wu-yc/LabClaw

Bulk-import an external knowledge base into Prismer memory via the three-layer import pipeline (07 §3.1).

Prismer-AI/PrismerCloud

Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization.

FreedomIntelligence/OpenClaw-Medical-Skills

Conduct a systematic literature review AND develop theory and hypotheses in one integrated workflow.

joshzyj/open-scholar-skill

Break down full ARR (ACL Rolling Review) reviewer responses into structured rebuttal units.

runtsang/RebuttalStudio

Look up chemicals in CAS Common Chemistry (name, CAS RN, SMILES, InChI; ~500k compounds)

lamm-mit/scienceclaw

Route empirical-research requests through the Auto-Empirical Research Skills catalog when this whole repository is installed as one skill in Codex, CodeBuddy, Claude Code, or another IDE.

brycewang-stanford/Auto-Empirical-Research-Skills

A skill your agent uses when selecting, implementing, or stress-testing the causal identification strategy for an empirical economics manuscript — difference-in-differences (including staggered…

brycewang-stanford/Auto-Empirical-Research-Skills

A skill your agent uses when positioning a manuscript against the existing economics literature, building the antecedents map for the introduction, deciding what to cite, or verifying that every…

brycewang-stanford/Auto-Empirical-Research-Skills

A skill your agent uses when responding to a Revise & Resubmit decision from AER, AER:Insights, or an AEJ, and a point-by-point response letter plus aligned manuscript revisions are needed.

brycewang-stanford/Auto-Empirical-Research-Skills

A skill your agent uses when assembling the AEA Data and Code Availability deposit for an AER, AER:Insights, or AEJ acceptance, writing the README, or auditing a replication package before the AEA…

brycewang-stanford/Auto-Empirical-Research-Skills

A skill your agent uses when evaluating whether a research idea clears the AER top-5 bar, when routing between AER, AER:Insights, and the AEJ family, or when sharpening a fuzzy contribution sentence…

brycewang-stanford/Auto-Empirical-Research-Skills

This skill should be used when the user asks to "review paper quality", "check paper completeness", "validate paper structure", "self-review before submission", or mentions systematic paper quality…

brycewang-stanford/Auto-Empirical-Research-Skills

Comprehensive Stata reference for writing correct .do files, data management, econometrics, causal inference, graphics, Mata programming, and 17+ community packages (reghdfe, estout, did, rdrobust…

brycewang-stanford/Auto-Empirical-Research-Skills

STATA code pattern library for empirical archival accounting research.

brycewang-stanford/Auto-Empirical-Research-Skills

A skill your agent uses when the user wants a YouTube video's transcript fetched, wants to summarize/analyze/quote a YouTube video by its spoken content, wants to search YouTube (globally or a…

davepoon/buildwithclaude

Weekly reset: commitments, stalled work, next-week plan. An agent skill from NousResearch/hermes-agent.

NousResearch/hermes-agent

Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50).

LeonChaoX/qinyan-academic-skills

Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs).

LeonChaoX/qinyan-academic-skills

Query GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative trait loci), and sQTLs.

LeonChaoX/qinyan-academic-skills

Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis.

LeonChaoX/qinyan-academic-skills

MUST use when user says 'save diary', 'write diary', 'diary entry', 'update diary', 'document session', or when a significant session needs to be preserved as a diary entry.

Kiyoraka/Project-AI-MemoryCore

Define knowledge bundles with Google's Open Knowledge Format (OKF) v0.1.

magnus919/agent-skills

Candidate gene evidence from perturbation, dependency, resistance, sensitivity, viability, or assay-context records.

exon-research/genomi

A skill your agent uses when evaluating Li Lu-style value investments: circle of competence, long-term compounding, deep research, conservative downside, China/global quality businesses, and…

questflowai/investorskills

Forces a memorysearch before the agent sends a message containing a factual assertion that has not yet been grounded this turn.

Bitterbot-AI/bitterbot-desktop

Draft or revise a related-work, background, or prior-art section in which every citation key already exists in the project bibliography.

Oleafly/Oleafly

Production-ready phylogenetics and sequence analysis skill for alignment processing, tree analysis, and evolutionary metrics.

wu-yc/LabClaw

Build and interpret polygenic risk scores (PRS) for complex diseases using GWAS summary statistics.

wu-yc/LabClaw

Retrieves protein structure data from RCSB PDB, PDBe, and AlphaFold with protein disambiguation, quality assessment, and comprehensive structural profiles.

wu-yc/LabClaw

Design novel protein therapeutics (binders, enzymes, scaffolds) using AI-guided de novo design.

wu-yc/LabClaw

Production-ready RNA-seq differential expression analysis using PyDESeq2.

wu-yc/LabClaw

Retrieves biological sequences (DNA, RNA, protein) from NCBI and ENA with gene disambiguation, accession type handling, and comprehensive sequence profiles.

wu-yc/LabClaw

Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels).

wu-yc/LabClaw

Read, search, and edit the user's Obsidian vault (notes, folders, canvas, bases, tasks, memory/workspaces, saved prompts) from the shell via the nexus CLI — no MCP connection needed.

ProfSynapse/nexus

Pharmaceutical machine-learning workflow guide for library profiling, molecular featurization, benchmark dataset fetch, medicinal-chemistry filtering, and optional pose-generation handoff.

DrugClaw/DrugClaw

Load when checking a bulk RNA-seq count matrix for library-size outliers, gene detection rates, and sample-sample correlation before DE.

TianGzlab/OmicsClaw

Wrapper skill for running nf-core/rnaseq bulk RNA-seq preprocessing from FASTQ or BAM inputs with strict preflight, reproducibility outputs, and downstream handoff to ClawBio bulk RNA-seq DE skills.

ClawBio/ClawBio

Differential expression analysis for bulk RNA-seq and pseudo-bulk count matrices with QC, PCA, and contrast testing.

ClawBio/ClawBio

Run DiffDock molecular docking via NVIDIA NIM to predict small-molecule binding poses against protein targets.

NVIDIA/skills

A skill your agent uses when writing or debugging nvMolKit Python code for GPU-accelerated RDKit fingerprints, similarity, conformers, clustering, and molecular searches.

NVIDIA/skills

Expert guidance for implementing SQL on FHIR v2 ViewDefinitions and operations to create portable, tabular projections of FHIR data.

aehrc/pathling

Compile LaTeX papers to PDF with automatic error detection, chktex style checking, and citation/reference validation.

lingzhi227/agent-research-skills

Deep research and discovery before building something new. An agent skill from jezweb/claude-skills.

jezweb/claude-skills

A skill your agent uses when a PDF, URL, transcript, clipping, or raw note must become source-grounded, linked, governed knowledge in an Obsidian vault.

Mark393295827/third-brain-v7-skills

Query the Crossref REST API for DOI validation, title search, citation metadata, and bibliography audits.

BioTender-max/awesome-bio-agent-skills

Convert input into clean, structured, hierarchical bullet points for summarization, note-taking, and structured thinking.

sickn33/agentic-awesome-skills