Hypothesis Generation
spacering-net/codeg
Structured hypothesis formulation from observations. An agent skill from spacering-net/codeg.
Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels).
Install Tooluniverse Systems Biology
$ npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-systems-biology --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio/tooluniverse-systems-biology .claude/skills/tooluniverse-systems-biology && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "tooluniverse-systems-biology" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/bio/tooluniverse-systems-biology into .claude/skills/tooluniverse-systems-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-systems-biology", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/wu-yc/LabClaw/tree/main/skills/bio/tooluniverse-systems-biologyType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-systems-biology --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio/tooluniverse-systems-biology .agents/skills/tooluniverse-systems-biology && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "tooluniverse-systems-biology" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/bio/tooluniverse-systems-biology into .agents/skills/tooluniverse-systems-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-systems-biology", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-systems-biology --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio/tooluniverse-systems-biology .cursor/skills/tooluniverse-systems-biology && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "tooluniverse-systems-biology" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/bio/tooluniverse-systems-biology into .cursor/skills/tooluniverse-systems-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-systems-biology", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/wu-yc/LabClaw.git --path skills/bio/tooluniverse-systems-biology--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-systems-biology --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio/tooluniverse-systems-biology .gemini/skills/tooluniverse-systems-biology && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "tooluniverse-systems-biology" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/bio/tooluniverse-systems-biology into .gemini/skills/tooluniverse-systems-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-systems-biology", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install wu-yc/LabClaw tooluniverse-systems-biologyInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio/tooluniverse-systems-biology .github/skills/tooluniverse-systems-biology && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "tooluniverse-systems-biology" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/bio/tooluniverse-systems-biology into .github/skills/tooluniverse-systems-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-systems-biology", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-systems-biology --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio/tooluniverse-systems-biology .opencode/skills/tooluniverse-systems-biology && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "tooluniverse-systems-biology" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/bio/tooluniverse-systems-biology into .opencode/skills/tooluniverse-systems-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-systems-biology", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
tooluniverse-systems-biology- GitHub stars
- 1.1k
- Used in
- 2 other repos
- Token cost
- ~3.3k tokens
- SKILL.md length
- 1,315 words
- Files
- 1
- Skills in repo
- 68
- Repo updated
- First seen
- Licence
- None found
At a glance
Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels).
- Works in 4 steps: Pathway Enrichment Analysis → Protein-Pathway Mapping → Keyword-Based Pathway Search → …
- Analyzing gene sets
- SKILL.md covers When to Use This Skill, Core Databases Integrated, Workflow Overview and Phase 1: Pathway Enrichment…, plus 7 more sections
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
What it does
Tooluniverse Systems Biology is an agent skill from wu-yc/LabClaw. Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels). Performs pathway enrichment, protein-pathway mapping, keyword searches, and systems-level analysis. Use when analyzing gene sets, exploring biological pathways, or investigating systems-level biology.
Its SKILL.md is about 3.3k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science. The repository describes itself as: LabClaw – Operating Layer for LabOS (Stanford-Princeton AI Co-Scientists).
When your agent uses it
- Analyzing gene sets
- Exploring biological pathways
- Investigating systems-level biology
Example prompts
- “/tooluniverse-systems-biology”
Workflow steps
4 steps, taken from the step headings in SKILL.md.
- Pathway Enrichment Analysis
- Protein-Pathway Mapping
- Keyword-Based Pathway Search
- Top-Level Pathway Catalog
What it can do on your machine
Read from SKILL.md and the folder at commit df37802. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Tooluniverse Systems Biology loads about 3.3k tokens when it runs. Until then it costs about 93 tokens; SKILL.md has 1,315 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 1,315 words (~3,281 tokens).
“Comprehensive pathway and systems biology analysis integrating multiple curated databases to provide multi-dimensional view of biological systems, pathway enrichment, and protein-pathway relationships.”
- name
- tooluniverse-systems-biology
Files
Just SKILL.md in skills/bio/tooluniverse-systems-biology of wu-yc/LabClaw.
Open the folder on GitHubat commit df37802
Used in 2 other repositories
We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 2 other GitHub owners. This page covers the copy in wu-yc/LabClaw, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Tooluniverse Systems Biology next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Tooluniverse Systems Biology this skillwu-yc/LabClaw | 1.1k | 2 repos | ~3.3k | Automated safety check: Pass | None | |
| Hypothesis Generationspacering-net/codeg | 3.9k | 14 repos | ~3.6k | Automated safety check: Notes | MIT | |
| GitHub Deep Researchbytedance/deer-flow | 84k | 4 repos | ~1.3k | Automated safety check: Pass | MIT | |
| Nature Paper CardYuan1z0825/nature-skills | 47k | 2 repos | ~2.1k | Automated safety check: Pass | Apache-2.0 | |
| Content Research Writerweapp-tailwindcss/weapp-tailwindcss | 1.9k | 25 repos | ~3.5k | Automated safety check: Pass | MIT | |
| Last30daysmvanhorn/last30days-skill | 64k | — | ~7.9k | Automated safety check: Notes | MIT |
Similar skills
GitHub Deep Research
bytedance/deer-flow
Researches a GitHub repository over four rounds using the GitHub API and web search, then writes a structured markdown report with timeline, metrics and Mermaid diagrams.
Nature Paper Card
Yuan1z0825/nature-skills
Builds a structured deep-reading card for one scientific paper, covering methods, how experiments support claims, limitations and research ideas, with a script to prepare the source.
Content Research Writer
weapp-tailwindcss/weapp-tailwindcss
Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section.
Last30days
mvanhorn/last30days-skill
Research what people actually say about any topic in the last 30 days.
Peer Review
spacering-net/codeg
Structured manuscript/grant review with checklist-based evaluation.
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Related
Categories
Questions about Tooluniverse Systems Biology
What does Tooluniverse Systems Biology do?
Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels). Tooluniverse Systems Biology is an agent skill from wu-yc/LabClaw. Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels).
When should I use Tooluniverse Systems Biology?
Tooluniverse Systems Biology fits situations like: analyzing gene sets; exploring biological pathways; investigating systems-level biology.
How do I install Tooluniverse Systems Biology in Claude Code?
Run `npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a claude-code`. Or copy the skill folder (skills/bio/tooluniverse-systems-biology in wu-yc/LabClaw) into .claude/skills/tooluniverse-systems-biology in your project. Claude Code loads it when a task matches its description.
How do I install Tooluniverse Systems Biology in Codex?
Run `npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a codex`. Or copy the skill folder (skills/bio/tooluniverse-systems-biology in wu-yc/LabClaw) into .agents/skills/tooluniverse-systems-biology in your project. Codex loads it when a task matches its description.
Can I use Tooluniverse Systems Biology in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wu-yc/LabClaw --skill tooluniverse-systems-biology -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/tooluniverse-systems-biology, .gemini/skills/tooluniverse-systems-biology, .github/skills/tooluniverse-systems-biology and .opencode/skills/tooluniverse-systems-biology in your project.
What does Tooluniverse Systems Biology need to run?
SKILL.md names no scripts, command-line tools or credentials: Tooluniverse Systems Biology is instructions for the agent only.
Does Tooluniverse Systems Biology access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Tooluniverse Systems Biology safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Tooluniverse Systems Biology use?
No licence was found for Tooluniverse Systems Biology or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Tooluniverse Systems Biology use?
About 3.3k tokens (SKILL.md is roughly 13k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Tooluniverse Systems Biology?
Skills that share tags, products or a category with Tooluniverse Systems Biology: Hypothesis Generation (spacering-net/codeg, 3.9k stars), GitHub Deep Research (bytedance/deer-flow, 84k stars), Nature Paper Card (Yuan1z0825/nature-skills, 47k stars) and Content Research Writer (weapp-tailwindcss/weapp-tailwindcss, 1.9k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Tooluniverse Systems Biology?
wu-yc (a GitHub user) maintains it in wu-yc/LabClaw, which has 1,055 GitHub stars. The repository holds 68 skills in this directory. The repository was last updated on March 19, 2026.
Source: wu-yc/LabClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.