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Agent skill

Tooluniverse Immune Repertoire Analysis

by wu-yc in wu-yc/LabClaw

Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data.

No licenceAuto-check passedResearch & Science

Install Tooluniverse Immune Repertoire Analysis

skills CLI
$ npx skills add wu-yc/LabClaw --skill tooluniverse-immune-repertoire-analysis -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install wu-yc/LabClaw tooluniverse-immune-repertoire-analysis --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio/tooluniverse-immune-repertoire-analysis .claude/skills/tooluniverse-immune-repertoire-analysis && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
tooluniverse-immune-repertoire-analysis
GitHub stars
1.1k
Used in
3 other repos
Token cost
~8k tokens
SKILL.md length
543 words
Files
1
Skills in repo
68
Repo updated
First seen
Licence
None found

At a glance

Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data.

  • Works in 8 steps: Data Import & Clonotype Definition → Diversity & Clonality Analysis → V(D)J Gene Usage Analysis → …
  • Adaptive immune response profiling
  • SKILL.md covers Overview, Core Workflow, Advanced Use Cases and ToolUniverse Tool Integration, plus 4 more sections
  • Reaches vdjdb.cdr3.net

What it does

Tooluniverse Immune Repertoire Analysis is an agent skill from wu-yc/LabClaw. Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data. Analyze TCR/BCR repertoires to assess clonality, diversity, V(D)J gene usage, CDR3 characteristics, convergence, and predict epitope specificity. Integrate with single-cell data for clonotype-phenotype associations. Use for adaptive immune response profiling, cancer immunotherapy research, vaccine response assessment, autoimmune disease studies, or repertoire diversity analysis in immunology research.

Its SKILL.md is about 8k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Research & Science, covering Bioinformatics. The repository describes itself as: LabClaw – Operating Layer for LabOS (Stanford-Princeton AI Co-Scientists).

When your agent uses it

  • Adaptive immune response profiling
  • Cancer immunotherapy research
  • Vaccine response assessment
  • Autoimmune disease studies

Example prompts

  • “/tooluniverse-immune-repertoire-analysis”

Requirements

  • Python 3

Workflow steps

8 steps, taken from the step headings in SKILL.md.

  1. Data Import & Clonotype Definition
  2. Diversity & Clonality Analysis
  3. V(D)J Gene Usage Analysis
  4. CDR3 Sequence Analysis
  5. Clonal Expansion Detection
  6. Convergence & Public Clonotypes
  7. Epitope Prediction & Specificity
  8. Integration with Single-Cell Data

What it can do on your machine

Read from SKILL.md and the folder at commit df37802. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md (its code samples are python).

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Hosts in commands or code, which the agent is likely to contact:

    • vdjdb.cdr3.net

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Tooluniverse Immune Repertoire Analysis loads about 8k tokens when it runs. Until then it costs about 133 tokens; SKILL.md has 543 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~133
When it runs · the whole SKILL.md, loaded when a task matches
~8k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 543 words (~7,994 tokens).

“Comprehensive skill for analyzing T-cell receptor (TCR) and B-cell receptor (BCR) repertoire sequencing data to characterize adaptive immune responses, clonal expansion, and antigen specificity.”

— opening of SKILL.md by wu-yc
name
tooluniverse-immune-repertoire-analysis

Read the full SKILL.md on GitHub

Files

Just SKILL.md in skills/bio/tooluniverse-immune-repertoire-analysis of wu-yc/LabClaw.

Open the folder on GitHubat commit df37802

Used in 3 other repositories

We found 3 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 3 other GitHub owners. This page covers the copy in wu-yc/LabClaw, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Tooluniverse Immune Repertoire Analysis next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Tooluniverse Immune Repertoire Analysis compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Tooluniverse Immune Repertoire Analysis this skillwu-yc/LabClaw1.1k3 repos~8kAutomated safety check: PassNone
Alphagenome Single Variant Analysisgoogle-deepmind/science-skills3.2k2 repos~3kAutomated safety check: NotesApache-2.0
13C Metabolic Flux AnalysisK-Dense-AI/scientific-agent-skills48k1 repos~3.2kAutomated safety check: PassMIT
Clinvar Databasegoogle-deepmind/science-skills3.2k2 repos~3.9kAutomated safety check: NotesApache-2.0
Metabolic Study Planneraiming-lab/AutoResearchClaw15k—~1.9kAutomated safety check: PassMIT
Dbsnp Databasegoogle-deepmind/science-skills3.2k2 repos~3.4kAutomated safety check: NotesApache-2.0

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Categories

Questions about Tooluniverse Immune Repertoire Analysis

What does Tooluniverse Immune Repertoire Analysis do?

Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data. Tooluniverse Immune Repertoire Analysis is an agent skill from wu-yc/LabClaw. Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data.

When should I use Tooluniverse Immune Repertoire Analysis?

Tooluniverse Immune Repertoire Analysis fits situations like: adaptive immune response profiling; cancer immunotherapy research; vaccine response assessment; autoimmune disease studies.

How do I install Tooluniverse Immune Repertoire Analysis in Claude Code?

Run `npx skills add wu-yc/LabClaw --skill tooluniverse-immune-repertoire-analysis -a claude-code`. Or copy the skill folder (skills/bio/tooluniverse-immune-repertoire-analysis in wu-yc/LabClaw) into .claude/skills/tooluniverse-immune-repertoire-analysis in your project. Claude Code loads it when a task matches its description.

How do I install Tooluniverse Immune Repertoire Analysis in Codex?

Run `npx skills add wu-yc/LabClaw --skill tooluniverse-immune-repertoire-analysis -a codex`. Or copy the skill folder (skills/bio/tooluniverse-immune-repertoire-analysis in wu-yc/LabClaw) into .agents/skills/tooluniverse-immune-repertoire-analysis in your project. Codex loads it when a task matches its description.

Can I use Tooluniverse Immune Repertoire Analysis in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wu-yc/LabClaw --skill tooluniverse-immune-repertoire-analysis -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/tooluniverse-immune-repertoire-analysis, .gemini/skills/tooluniverse-immune-repertoire-analysis, .github/skills/tooluniverse-immune-repertoire-analysis and .opencode/skills/tooluniverse-immune-repertoire-analysis in your project.

What does Tooluniverse Immune Repertoire Analysis need to run?

SKILL.md names no scripts, command-line tools or credentials: Tooluniverse Immune Repertoire Analysis is instructions for the agent only. Our summary lists: Python 3.

Does Tooluniverse Immune Repertoire Analysis access the network?

SKILL.md names 1 domain. In commands or code: vdjdb.cdr3.net; the agent is likely to contact it when it follows the instructions. This is read from the text; nothing was executed.

Is Tooluniverse Immune Repertoire Analysis safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Tooluniverse Immune Repertoire Analysis use?

No licence was found for Tooluniverse Immune Repertoire Analysis or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Tooluniverse Immune Repertoire Analysis use?

About 8k tokens (SKILL.md is roughly 32k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Tooluniverse Immune Repertoire Analysis?

Skills that share tags, products or a category with Tooluniverse Immune Repertoire Analysis: Alphagenome Single Variant Analysis (google-deepmind/science-skills, 3.2k stars), 13C Metabolic Flux Analysis (K-Dense-AI/scientific-agent-skills, 48k stars), Clinvar Database (google-deepmind/science-skills, 3.2k stars) and Metabolic Study Planner (aiming-lab/AutoResearchClaw, 15k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Tooluniverse Immune Repertoire Analysis?

wu-yc (a GitHub user) maintains it in wu-yc/LabClaw, which has 1,055 GitHub stars. The repository holds 68 skills in this directory. The repository was last updated on March 19, 2026.

Source: wu-yc/LabClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.