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FreedomIntelligence/OpenClaw-Medical-Skills
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 97 | Build, manage, and search spectral libraries for proteomics. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 98 | Detect sample contamination and cross-species reads using FastQ Screen. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 99 | Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umitools. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 100 | Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 101 | Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 102 | Detect ribosome pausing and stalling sites from Ribo-seq data at codon resolution. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 103 | Calculate translation efficiency (TE) as the ratio of ribosome occupancy to mRNA abundance. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 104 | Infer cell-cell communication networks from scRNA-seq data using CellChat, NicheNet, and LIANA for ligand-receptor interaction analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 105 | Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 106 | Detect and remove doublets (multiple cells captured in one droplet) from single-cell RNA-seq data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 107 | Reconstruct cell lineage trees from CRISPR barcode tracing or mitochondrial mutations. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 108 | Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 109 | Analyze Perturb-seq and CROP-seq CRISPR screening data integrated with scRNA-seq. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 110 | Quality control, filtering, and normalization for single-cell RNA-seq using Seurat (R) and Scanpy (Python). | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 111 | Single-cell ATAC-seq analysis with Signac (R/Seurat) and ArchR. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 112 | Infer developmental trajectories and pseudotime from single-cell RNA-seq data using Monocle3, Slingshot, and scVelo for RNA velocity analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 113 | Process and analyze tissue images from spatial transcriptomics data using Squidpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 114 | Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 115 | Analyze high-resolution spatial platforms like Slide-seq, Stereo-seq, and Visium HD. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 116 | Analyzes spatial proteomics data from CODEX, IMC, and MIBI platforms including cell segmentation and protein colocalization. | FreedomIntelligence/ | 3.1k | 1 repo | ~976 | Automated safety check: Pass | No licence | 2 mo ago |
| 117 | Access and analyze AlphaFold protein structure predictions. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 118 | Predict protein structures using modern ML models including AlphaFold3, ESMFold, Chai-1, and Boltz-1. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 119 | Perform V(D)J alignment and clonotype assembly from TCR-seq or BCR-seq data using MiXCR. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 120 | Calculate immune repertoire diversity metrics, compare samples, and track clonal dynamics using VDJtools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 121 | Estimates circulating tumor DNA fraction from shallow whole-genome sequencing using ichorCNA. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 122 | Comprehensive variant annotation using bcftools annotate/csq, VEP, SnpEff, and ANNOVAR. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 123 | Call SNPs and indels from aligned reads using bcftools mpileup and call. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 124 | Clinical variant interpretation using ClinVar, ACMG guidelines, and pathogenicity predictors. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 125 | Deep learning-based variant calling with Google DeepVariant. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 126 | Comprehensive variant filtering including GATK VQSR, hard filters, bcftools expressions, and quality metric interpretation for SNPs and indels. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 127 | Joint genotype calling across multiple samples using GATK CombineGVCFs and GenotypeGVCFs. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 128 | 128.Bio Vcf Basics View, query, and understand VCF/BCF variant files using bcftools and cyvcf2. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 129 | Merge, concatenate, sort, intersect, and subset VCF files using bcftools. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 130 | Generate variant statistics, sample concordance, and quality metrics using bcftools stats and gtcheck. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 131 | 131.Pubmed Search Search PubMed for scientific literature. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~751 | Automated safety check: Pass | No licence | 2 mo ago |
| 132 | Trauma-informed AI moderator for addiction recovery communities. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 133 | 133.Wikipedia Search Search and fetch structured content from Wikipedia using the MediaWiki API for reliable, encyclopedic information | FreedomIntelligence/ | 3.1k | 1 repo | ~3.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 134 | Perform differential expression analysis using edgeR in R/Bioconductor. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 135 | 135.Bio De Results Extract, filter, annotate, and export differential expression results from DESeq2 or edgeR. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 136 | Remove batch effects from RNA-seq data using ComBat, ComBat-Seq, limma removeBatchEffect, and SVA for unknown batch variables. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 137 | Analyze time-series RNA-seq data using limma voom with splines, maSigPro, and ImpulseDE2. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 138 | Perform multi-locus sequence typing (MLST), core genome MLST, and SNP-based strain typing for bacterial isolate characterization using mlst and chewBBACA. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 139 | Work with FASTQ quality scores using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 140 | Comprehensive quality control for flow cytometry and CyTOF data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 141 | Differential abundance and state analysis for cytometry data. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 142 | Manual and automated gating for defining cell populations in flow cytometry. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 143 | Variant calling with GATK HaplotypeCaller following best practices. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 144 | Detect A/B compartments from Hi-C data using cooltools and eigenvector decomposition. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
