Bio Flow Cytometry Cytometry Qc
GPTomics/bioSkills
Quality control for flow, spectral, and mass cytometry - time-based anomaly cleaning (flowAI, flowCut, PeacoQC, flowClean), margin/boundary event removal, signal-drift detection, dead-cell…
Agent skill
Bio Flow Cytometry Cytometry Qc
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Comprehensive quality control for flow cytometry and CyTOF data.
No licenceAuto-check passed
Install Bio Flow Cytometry Cytometry Qc
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-cytometry-qc --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-flow-cytometry-cytometry-qc .claude/skills/bio-flow-cytometry-cytometry-qc && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-flow-cytometry-cytometry-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-cytometry-qc into .claude/skills/bio-flow-cytometry-cytometry-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-cytometry-qc", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-cytometry-qcType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-cytometry-qc --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-flow-cytometry-cytometry-qc .agents/skills/bio-flow-cytometry-cytometry-qc && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-flow-cytometry-cytometry-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-cytometry-qc into .agents/skills/bio-flow-cytometry-cytometry-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-cytometry-qc", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-cytometry-qc --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-flow-cytometry-cytometry-qc .cursor/skills/bio-flow-cytometry-cytometry-qc && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-flow-cytometry-cytometry-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-cytometry-qc into .cursor/skills/bio-flow-cytometry-cytometry-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-cytometry-qc", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-flow-cytometry-cytometry-qc--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-cytometry-qc --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-flow-cytometry-cytometry-qc .gemini/skills/bio-flow-cytometry-cytometry-qc && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-flow-cytometry-cytometry-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-cytometry-qc into .gemini/skills/bio-flow-cytometry-cytometry-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-cytometry-qc", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-cytometry-qcInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-flow-cytometry-cytometry-qc .github/skills/bio-flow-cytometry-cytometry-qc && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-flow-cytometry-cytometry-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-cytometry-qc into .github/skills/bio-flow-cytometry-cytometry-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-cytometry-qc", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-cytometry-qc --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-flow-cytometry-cytometry-qc .opencode/skills/bio-flow-cytometry-cytometry-qc && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-flow-cytometry-cytometry-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-cytometry-qc into .opencode/skills/bio-flow-cytometry-cytometry-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-cytometry-qc", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-flow-cytometry-cytometry-qc- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~2.8k tokens
- SKILL.md length
- 192 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Comprehensive quality control for flow cytometry and CyTOF data.
- Assessing acquisition quality
- SKILL.md covers Version Compatibility, Automated QC with flowAI, Flow Rate Stability and Signal Drift Detection, plus 7 more sections
- Runs R scripts from its folder
- Identifying problematic samples before analysis
What it does
Bio Flow Cytometry Cytometry Qc is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Comprehensive quality control for flow cytometry and CyTOF data. Covers flow rate stability, signal drift, margin events, dead cell exclusion, and batch QC. Use when assessing acquisition quality or identifying problematic samples before analysis.
Its SKILL.md is about 2.8k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `usage-guide.md`).
The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Assessing acquisition quality
- Identifying problematic samples before analysis
Example prompts
- “/bio-flow-cytometry-cytometry-qc”
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (R), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Flow Cytometry Cytometry Qc loads about 2.8k tokens when it runs. Until then it costs about 70 tokens; SKILL.md has 192 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 192 words (~2,791 tokens).
“Reference examples tested with: flowCore 2.14+, ggplot2 3.5+”
- name
- bio-flow-cytometry-cytometry-qc
- tool_type
- r
- primary_tool
- flowAI
Files
SKILL.md and 2 other files in skills/bio-flow-cytometry-cytometry-qc of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/run_qc.R
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.
Compare with similar skills
Bio Flow Cytometry Cytometry Qc next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Flow Cytometry Cytometry Qc this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~2.8k | Automated safety check: Pass | None | |
| Bio Flow Cytometry Cytometry QcGPTomics/bioSkills | 1.2k | 1 repos | ~2.5k | Automated safety check: Pass | MIT | |
| Bio Flow Cytometry Fcs HandlingGPTomics/bioSkills | 1.2k | 1 repos | ~2.5k | Automated safety check: Pass | MIT | |
| Bio Workflows Cytometry PipelineGPTomics/bioSkills | 1.2k | 1 repos | ~3.9k | Automated safety check: Pass | MIT | |
| Bio Flow Cytometry Bead NormalizationGPTomics/bioSkills | 1.2k | 1 repos | ~2k | Automated safety check: Pass | MIT | |
| Bio Flow Cytometry Doublet DetectionGPTomics/bioSkills | 1.2k | 1 repos | ~2k | Automated safety check: Pass | MIT |
Similar skills
Bio Flow Cytometry Fcs Handling
GPTomics/bioSkills
Reads, inspects, and writes Flow Cytometry Standard (FCS) files from conventional, spectral, and mass cytometry (CyTOF), and parses FlowJo/Cytobank/Diva workspaces.
Bio Workflows Cytometry Pipeline
GPTomics/bioSkills
End-to-end flow, spectral, and mass cytometry (CyTOF) pipeline from raw FCS files to differentially abundant/expressed cell populations.
Bio Flow Cytometry Bead Normalization
GPTomics/bioSkills
Bead-based signal normalization and cross-batch harmonization for CyTOF and high-parameter cytometry - EQ four-element bead normalization of instrument sensitivity drift (CATALYST normCytof…
Bio Flow Cytometry Doublet Detection
GPTomics/bioSkills
Detects and removes doublets/aggregates from flow, spectral, and mass cytometry before clustering or quantification.
Bio Flow Cytometry Clustering Phenotyping
GPTomics/bioSkills
Unsupervised clustering and cell-type identification for high-dimensional flow, spectral, and mass cytometry - FlowSOM, PhenoGraph, FlowSOM-via-CATALYST, with UMAP/tSNE for visualization.
More from FreedomIntelligence/OpenClaw-Medical-Skills
All 279 skills in this repoSingle Cell Rna Qc
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
Differentiation Schemes
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
Fhir Developer Skill
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
Linear Solvers
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
Medical Research Toolkit
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
Mesh Generation
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Questions about Bio Flow Cytometry Cytometry Qc
What does Bio Flow Cytometry Cytometry Qc do?
Comprehensive quality control for flow cytometry and CyTOF data. Bio Flow Cytometry Cytometry Qc is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Comprehensive quality control for flow cytometry and CyTOF data.
When should I use Bio Flow Cytometry Cytometry Qc?
Bio Flow Cytometry Cytometry Qc fits situations like: assessing acquisition quality; identifying problematic samples before analysis.
How do I install Bio Flow Cytometry Cytometry Qc in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a claude-code`. Or copy the skill folder (skills/bio-flow-cytometry-cytometry-qc in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-flow-cytometry-cytometry-qc in your project. Claude Code loads it when a task matches its description.
How do I install Bio Flow Cytometry Cytometry Qc in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a codex`. Or copy the skill folder (skills/bio-flow-cytometry-cytometry-qc in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-flow-cytometry-cytometry-qc in your project. Codex loads it when a task matches its description.
Can I use Bio Flow Cytometry Cytometry Qc in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-cytometry-qc -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-flow-cytometry-cytometry-qc, .gemini/skills/bio-flow-cytometry-cytometry-qc, .github/skills/bio-flow-cytometry-cytometry-qc and .opencode/skills/bio-flow-cytometry-cytometry-qc in your project.
What does Bio Flow Cytometry Cytometry Qc need to run?
Going by SKILL.md and its folder, Bio Flow Cytometry Cytometry Qc needs R for the scripts in its folder.
Does Bio Flow Cytometry Cytometry Qc access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Bio Flow Cytometry Cytometry Qc safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Flow Cytometry Cytometry Qc use?
No licence was found for Bio Flow Cytometry Cytometry Qc or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Flow Cytometry Cytometry Qc use?
About 2.8k tokens (SKILL.md is roughly 11k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Flow Cytometry Cytometry Qc?
Skills that share tags, products or a category with Bio Flow Cytometry Cytometry Qc: Bio Flow Cytometry Cytometry Qc (GPTomics/bioSkills, 1.2k stars), Bio Flow Cytometry Fcs Handling (GPTomics/bioSkills, 1.2k stars), Bio Workflows Cytometry Pipeline (GPTomics/bioSkills, 1.2k stars) and Bio Flow Cytometry Bead Normalization (GPTomics/bioSkills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Flow Cytometry Cytometry Qc?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.