Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.
$ npx skills add ClawBio/ClawBio --skill repro-enforcer -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install ClawBio/ClawBio repro-enforcer --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/repro-enforcer .claude/skills/repro-enforcer && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "repro-enforcer" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/repro-enforcer into .claude/skills/repro-enforcer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "repro-enforcer", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/ClawBio/ClawBio/tree/main/skills/repro-enforcerType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add ClawBio/ClawBio --skill repro-enforcer -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install ClawBio/ClawBio repro-enforcer --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/repro-enforcer .agents/skills/repro-enforcer && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "repro-enforcer" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/repro-enforcer into .agents/skills/repro-enforcer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "repro-enforcer", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ClawBio/ClawBio --skill repro-enforcer -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install ClawBio/ClawBio repro-enforcer --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/repro-enforcer .cursor/skills/repro-enforcer && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "repro-enforcer" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/repro-enforcer into .cursor/skills/repro-enforcer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "repro-enforcer", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/ClawBio/ClawBio.git --path skills/repro-enforcer--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add ClawBio/ClawBio --skill repro-enforcer -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install ClawBio/ClawBio repro-enforcer --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/repro-enforcer .gemini/skills/repro-enforcer && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "repro-enforcer" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/repro-enforcer into .gemini/skills/repro-enforcer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "repro-enforcer", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install ClawBio/ClawBio repro-enforcerInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add ClawBio/ClawBio --skill repro-enforcer -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/repro-enforcer .github/skills/repro-enforcer && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "repro-enforcer" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/repro-enforcer into .github/skills/repro-enforcer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "repro-enforcer", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ClawBio/ClawBio --skill repro-enforcer -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install ClawBio/ClawBio repro-enforcer --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/repro-enforcer .opencode/skills/repro-enforcer && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "repro-enforcer" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/repro-enforcer into .opencode/skills/repro-enforcer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "repro-enforcer", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
repro-enforcerExport any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.
Repro Enforcer is an agent skill from ClawBio/ClawBio. Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.
Its SKILL.md is about 410 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Reproducible research and Bioinformatics. It works with Nextflow and Docker. The repository describes itself as: 🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free. The licence is MIT.
7 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit dece754. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Repro Enforcer loads about 413 tokens when it runs. Until then it costs about 39 tokens; SKILL.md has 146 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from ClawBio/ClawBio at commit dece754, republished under its MIT licence (© ClawBio). 146 words, ~413 tokens.
.claude/skills/repro-enforcer/SKILL.md (or your agent's skills folder).You are the Repro Enforcer, a specialised agent for making bioinformatics analyses reproducible and portable.
environment.yml.def file from the analysis dependenciespyyaml (YAML generation)conda (environment capture), singularity (container build), nextflow (pipeline validation)Planned -- implementation targeting Week 6 (Apr 3-9).
© ClawBio, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in skills/repro-enforcer of ClawBio/ClawBio.
Open the folder on GitHubat commit dece754
We found 3 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 3 other GitHub owners. This page covers the copy in ClawBio/ClawBio, which our catalogue first saw on October 7, 2026.
Repro Enforcer next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Repro Enforcer this skillClawBio/ClawBio | 1.2k | 3 repos | ~413 | Automated safety check: Pass | MIT | |
| Bio Workflow Management Nf Core PipelinesGPTomics/bioSkills | 1.2k | 1 repos | ~4.1k | Automated safety check: Pass | MIT | |
| LaminDB Biological Data Managementdavila7/claude-code-templates | 32k | 12 repos | ~3.6k | Automated safety check: Pass | MIT | |
| Latchbio Integrationdavila7/claude-code-templates | 32k | 11 repos | ~2.4k | Automated safety check: Pass | MIT | |
| Latchbio IntegrationK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~2.5k | Automated safety check: Notes | MIT | |
| PacsomaticK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~1.6k | Automated safety check: Pass | MIT |
GPTomics/bioSkills
Runs and configures curated nf-core community Nextflow pipelines (rnaseq, sarek, atacseq, methylseq, ampliseq, taxprofiler, fetchngs) reproducibly, pinning the pipeline revision with -r and…
davila7/claude-code-templates
Manages biological datasets with LaminDB: versioned artifacts, run lineage, ontology-based annotation, schema validation and links to workflow managers and ML tools.
davila7/claude-code-templates
Latch platform for bioinformatics workflows. An agent skill from davila7/claude-code-templates.
K-Dense-AI/scientific-agent-skills
Builds, registers, debugs, and operates bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Registry, Nextflow, Snakemake, programmatic execution, and Latch MCP.
K-Dense-AI/scientific-agent-skills
Prepares and launches nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows from unaligned BAM inputs.
K-Dense-AI/scientific-agent-skills
Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow.
ClawBio/ClawBio
Fetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP.
ClawBio/ClawBio
Query TCGA tumor biology through the ucscxenatoolspy API. An agent skill from ClawBio/ClawBio.
ClawBio/ClawBio
Fetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via tabix-on-FTP.
ClawBio/ClawBio
Population genetics of pre-aligned DNA sequences or multi-sample VCFs using selected DnaSP 6 methods.
ClawBio/ClawBio
Compute pairwise r² between a lead variant and every variant in a window using the 1000 Genomes Phase 3 GRCh38 reference panel, ancestry-stratified.
ClawBio/ClawBio
Download genomes, genes, virus sequences, and taxonomy data from NCBI using the datasets and dataformat CLI tools.
Categories
Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline. Repro Enforcer is an agent skill from ClawBio/ClawBio. Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.
Repro Enforcer fits situations like: tasks that involve Reproducible research; tasks that involve Bioinformatics.
Run `npx skills add ClawBio/ClawBio --skill repro-enforcer -a claude-code`. Or copy the skill folder (skills/repro-enforcer in ClawBio/ClawBio) into .claude/skills/repro-enforcer in your project. Claude Code loads it when a task matches its description.
Run `npx skills add ClawBio/ClawBio --skill repro-enforcer -a codex`. Or copy the skill folder (skills/repro-enforcer in ClawBio/ClawBio) into .agents/skills/repro-enforcer in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add ClawBio/ClawBio --skill repro-enforcer -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/repro-enforcer, .gemini/skills/repro-enforcer, .github/skills/repro-enforcer and .opencode/skills/repro-enforcer in your project.
SKILL.md names no scripts, command-line tools or credentials: Repro Enforcer is instructions for the agent only. Our summary lists: Python 3; Docker.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Repro Enforcer is published under the MIT licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.
About 413 tokens (SKILL.md is roughly 1.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Repro Enforcer: Bio Workflow Management Nf Core Pipelines (GPTomics/bioSkills, 1.2k stars), LaminDB Biological Data Management (davila7/claude-code-templates, 32k stars), Latchbio Integration (davila7/claude-code-templates, 32k stars) and Latchbio Integration (K-Dense-AI/scientific-agent-skills, 48k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
ClawBio (a GitHub organization) maintains it in ClawBio/ClawBio, which has 1,154 GitHub stars. The repository holds 104 skills in this directory. The repository was last updated on October 8, 2026.
Source: ClawBio/ClawBio on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
