Topic · Research & Science
Best bioinformatics skills, page 7
Bioinformatics skills, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 289 | Analyze metabolomics data including metabolite identification, quantification, pathway analysis, and metabolic flux. | wu-yc/ | 1.1k | 2 repos | ~5.9k | Automated safety check: Pass | No licence | 6 mo ago |
| 290 | Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine. | wu-yc/ | 1.1k | 2 repos | ~6k | Automated safety check: Pass | No licence | 6 mo ago |
| 291 | Comprehensive multi-omics disease characterization integrating genomics, transcriptomics, proteomics, pathway, and therapeutic layers for systems-level understanding. | wu-yc/ | 1.1k | 2 repos | ~10k | Automated safety check: Pass | No licence | 6 mo ago |
| 292 | Comprehensive patient stratification for precision medicine by integrating genomic, clinical, and therapeutic data. | wu-yc/ | 1.1k | 2 repos | ~12k | Automated safety check: Pass | No licence | 6 mo ago |
| 293 | Analyze mass spectrometry proteomics data including protein quantification, differential expression, post-translational modifications (PTMs), and protein-protein interactions. | wu-yc/ | 1.1k | 2 repos | ~6.6k | Automated safety check: Pass | No licence | 6 mo ago |
| 294 | Computational analysis framework for spatial multi-omics data integration. | wu-yc/ | 1.1k | 2 repos | ~12k | Automated safety check: Pass | No licence | 6 mo ago |
| 295 | Comprehensive structural variant (SV) analysis skill for clinical genomics. | wu-yc/ | 1.1k | 2 repos | ~12k | Automated safety check: Pass | No licence | 6 mo ago |
| 296 | Guide to interpreting BUSCO completeness statuses: why Duplicated BUSCOs count as complete, parsing output files, computing/comparing completeness across proteomes/genomes, common counting mistakes. | jaechang-hits/ | 371 | 1 repo | ~3.9k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 297 | 297.Genomic Inquiry Default entry for natural-language DNA questions. An agent skill from exon-research/genomi. | exon-research/ | 484 | — | ~2.1k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 298 | Guide through omicverse's alignment module for SRA downloading, FASTQ quality control, STAR alignment, gene quantification, and single-cell kallisto/bustools pipelines covering both bulk and… | FreedomIntelligence/ | 3.1k | 2 repos | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 299 | Map scRNA-seq atlases onto spatial transcriptomics slides using omicverse's Single2Spatial workflow for deep-forest training, spot-level assessment, and marker visualisation. | FreedomIntelligence/ | 3.1k | 2 repos | ~994 | Automated safety check: Pass | No licence | 2 mo ago |
| 300 | Load when summarising STAR / HISAT2 / Salmon alignment-rate logs in bulk RNA-seq. | TianGzlab/ | 161 | — | ~1.3k | Automated safety check: Pass | Apache-2.0 | 2 days ago |
| 301 | 301.Harness Evolve Run @metaharness/darwin evolve <repo to mutate a harness's seven policy surfaces (planner/contextBuilder/reviewer/retryPolicy/toolPolicy/memoryPolicy/scorePolicy), sandbox-score each variant, and… | ruvnet/ | 74k | — | ~1.6k | Automated safety check: Notes | MIT | today |
| 302 | 302.Harness Genome 7-section repo readiness report from metaharness genome <path. | ruvnet/ | 74k | — | ~558 | Automated safety check: Notes | MIT | today |
| 303 | 303.Harness Gepa Inspect and audit GEPA genomes via the @metaharness/darwin/gepa library entry (darwin 0.8.0) — load/validate a genome (default is the shipped cand-6 promotion), render the system prompt a genome… | ruvnet/ | 74k | — | ~826 | Automated safety check: Notes | MIT | today |
| 304 | 304.Harness Learn Run a GEPA learning cycle via metaharness learn (upstream ADR-235, metaharness@0.3.0) — optimizes a harness genome against a SWE-bench-style slice manifest. | ruvnet/ | 74k | — | ~800 | Automated safety check: Notes | MIT | today |
| 305 | ADR-152 — weighted similarity between two harness fingerprints (genome + score JSON). | ruvnet/ | 74k | — | ~866 | Automated safety check: Notes | MIT | today |
| 306 | 306.Tiledbvcf Efficient storage and retrieval of genomic variant data using TileDB. | agent-skills-hub/ | 111 | 4 repos | ~3.8k | Automated safety check: Pass | MIT | 7 days ago |
| 307 | Process multiple sequence files in batch using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 308 | Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 309 | Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 310 | Perform differential expression analysis using DESeq2 in R/Bioconductor. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 311 | Detect and track antimicrobial resistance genes using AMRFinderPlus and ResFinder with epidemiological context. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 312 | Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 313 | Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 314 | Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 315 | Filter and select sequences by criteria (length, ID, GC content, patterns) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 316 | Convert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 317 | Design guides for cytosine and adenine base editing using editing window optimization and BE-Hive outcome prediction. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 318 | Design guide RNAs for CRISPR-Cas9/Cas12a experiments using CRISPRscan and local scoring algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 319 | Design homology-directed repair donor templates for CRISPR knock-ins using primer3-py. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 320 | Predict CRISPR off-target sites using Cas-OFFinder and CFD scoring algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 321 | Design pegRNAs for prime editing using PrimeDesign algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 322 | Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 323 | Cell segmentation from multiplexed tissue images. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 324 | Align long reads using minimap2 for Oxford Nanopore and PacBio data. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 325 | Polish assemblies and call variants from Oxford Nanopore data using medaka. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 326 | Species abundance estimation using Bracken with Kraken2 output. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 327 | Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 328 | Profile functional potential of metagenomes using HUMAnN3 and similar tools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 329 | Marker gene-based taxonomic profiling using MetaPhlAn 4. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 330 | Track bacterial strains using MASH, sourmash, fastANI, and inStrain. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 331 | Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn). | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 332 | Bisulfite sequencing read alignment using Bismark with bowtie2/hisat2. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 333 | Multi-Omics Factor Analysis (MOFA2) for unsupervised integration of multiple data modalities. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 334 | Handle paired-end FASTQ files (R1/R2) using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 335 | Perform geometric calculations on protein structures using Biopython Bio.PDB. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 336 | Parse and write protein structure files using Biopython Bio.PDB. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
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