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Agent skill

Tooluniverse Multi Omics Integration

by wu-yc in wu-yc/LabClaw

Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine.

No licenceAuto-check passedResearch & Science

Install Tooluniverse Multi Omics Integration

skills CLI
$ npx skills add wu-yc/LabClaw --skill tooluniverse-multi-omics-integration -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install wu-yc/LabClaw tooluniverse-multi-omics-integration --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio/tooluniverse-multi-omics-integration .claude/skills/tooluniverse-multi-omics-integration && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
tooluniverse-multi-omics-integration
GitHub stars
1.1k
Used in
2 other repos
Token cost
~6k tokens
SKILL.md length
992 words
Files
1
Skills in repo
68
Repo updated
First seen
Licence
None found

At a glance

Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine.

  • Works in 8 steps: Data Loading & Quality Control → Sample Matching → Feature Mapping → …
  • Analyzing multi-omics datasets
  • SKILL.md covers When to Use This Skill, Core Capabilities, Workflow Overview and Phase Details, plus 6 more sections
  • Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md

What it does

Tooluniverse Multi Omics Integration is an agent skill from wu-yc/LabClaw. Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine. Performs cross-omics correlation, multi-omics clustering (MOFA+, NMF), pathway-level integration, and sample matching. Coordinates ToolUniverse skills for expression data (RNA-seq), epigenomics (methylation, ChIP-seq), variants (SNVs, CNVs), protein interactions, and pathway enrichment. Use when analyzing multi-omics datasets, performing integrative analysis…

Its SKILL.md is about 6k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Research & Science, covering Bioinformatics. The repository describes itself as: LabClaw – Operating Layer for LabOS (Stanford-Princeton AI Co-Scientists).

When your agent uses it

  • Analyzing multi-omics datasets
  • Performing integrative analysis
  • Discovering multi-omics biomarkers
  • Studying disease mechanisms across molecular layers

Example prompts

  • “/tooluniverse-multi-omics-integration”

Requirements

  • Python 3

Workflow steps

8 steps, taken from the step headings in SKILL.md.

  1. Data Loading & Quality Control
  2. Sample Matching
  3. Feature Mapping
  4. Cross-Omics Correlation
  5. Multi-Omics Clustering
  6. Pathway-Level Integration
  7. Biomarker Discovery
  8. Integrated Reporting

What it can do on your machine

Read from SKILL.md and the folder at commit df37802. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md (its code samples are python and markdown).

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Links to these hosts (documentation or services it may open):

    • doi.org

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Tooluniverse Multi Omics Integration loads about 6k tokens when it runs. Until then it costs about 197 tokens; SKILL.md has 992 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~197
When it runs · the whole SKILL.md, loaded when a task matches
~6k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 992 words (~5,987 tokens).

“Coordinate and integrate multiple omics datasets for comprehensive systems biology analysis. This skill orchestrates specialized ToolUniverse skills to perform cross-omics correlation, multi-omics clustering, pathway-level integration, and unified interpretation across molecular layers.”

— opening of SKILL.md by wu-yc
name
tooluniverse-multi-omics-integration

Read the full SKILL.md on GitHub

Files

Just SKILL.md in skills/bio/tooluniverse-multi-omics-integration of wu-yc/LabClaw.

Open the folder on GitHubat commit df37802

Used in 2 other repositories

We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 2 other GitHub owners. This page covers the copy in wu-yc/LabClaw, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Tooluniverse Multi Omics Integration next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Tooluniverse Multi Omics Integration compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Tooluniverse Multi Omics Integration this skillwu-yc/LabClaw1.1k2 repos~6kAutomated safety check: PassNone
Alphagenome Single Variant Analysisgoogle-deepmind/science-skills3.2k2 repos~3kAutomated safety check: NotesApache-2.0
13C Metabolic Flux AnalysisK-Dense-AI/scientific-agent-skills48k1 repos~3.2kAutomated safety check: PassMIT
Clinvar Databasegoogle-deepmind/science-skills3.2k2 repos~3.9kAutomated safety check: NotesApache-2.0
Metabolic Study Planneraiming-lab/AutoResearchClaw15k—~1.9kAutomated safety check: PassMIT
Dbsnp Databasegoogle-deepmind/science-skills3.2k2 repos~3.4kAutomated safety check: NotesApache-2.0

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  • Tooluniverse Expression Data Retrieval

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  • Tooluniverse Gene Enrichment

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Categories

Questions about Tooluniverse Multi Omics Integration

What does Tooluniverse Multi Omics Integration do?

Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine. Tooluniverse Multi Omics Integration is an agent skill from wu-yc/LabClaw. Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine.

When should I use Tooluniverse Multi Omics Integration?

Tooluniverse Multi Omics Integration fits situations like: analyzing multi-omics datasets; performing integrative analysis; discovering multi-omics biomarkers; studying disease mechanisms across molecular layers.

How do I install Tooluniverse Multi Omics Integration in Claude Code?

Run `npx skills add wu-yc/LabClaw --skill tooluniverse-multi-omics-integration -a claude-code`. Or copy the skill folder (skills/bio/tooluniverse-multi-omics-integration in wu-yc/LabClaw) into .claude/skills/tooluniverse-multi-omics-integration in your project. Claude Code loads it when a task matches its description.

How do I install Tooluniverse Multi Omics Integration in Codex?

Run `npx skills add wu-yc/LabClaw --skill tooluniverse-multi-omics-integration -a codex`. Or copy the skill folder (skills/bio/tooluniverse-multi-omics-integration in wu-yc/LabClaw) into .agents/skills/tooluniverse-multi-omics-integration in your project. Codex loads it when a task matches its description.

Can I use Tooluniverse Multi Omics Integration in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wu-yc/LabClaw --skill tooluniverse-multi-omics-integration -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/tooluniverse-multi-omics-integration, .gemini/skills/tooluniverse-multi-omics-integration, .github/skills/tooluniverse-multi-omics-integration and .opencode/skills/tooluniverse-multi-omics-integration in your project.

What does Tooluniverse Multi Omics Integration need to run?

SKILL.md names no scripts, command-line tools or credentials: Tooluniverse Multi Omics Integration is instructions for the agent only. Our summary lists: Python 3.

Does Tooluniverse Multi Omics Integration access the network?

SKILL.md names 1 domain. As links in the text: doi.org. This is read from the text; nothing was executed.

Is Tooluniverse Multi Omics Integration safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Tooluniverse Multi Omics Integration use?

No licence was found for Tooluniverse Multi Omics Integration or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Tooluniverse Multi Omics Integration use?

About 6k tokens (SKILL.md is roughly 24k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Tooluniverse Multi Omics Integration?

Skills that share tags, products or a category with Tooluniverse Multi Omics Integration: Alphagenome Single Variant Analysis (google-deepmind/science-skills, 3.2k stars), 13C Metabolic Flux Analysis (K-Dense-AI/scientific-agent-skills, 48k stars), Clinvar Database (google-deepmind/science-skills, 3.2k stars) and Metabolic Study Planner (aiming-lab/AutoResearchClaw, 15k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Tooluniverse Multi Omics Integration?

wu-yc (a GitHub user) maintains it in wu-yc/LabClaw, which has 1,055 GitHub stars. The repository holds 68 skills in this directory. The repository was last updated on March 19, 2026.

Source: wu-yc/LabClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.