Repo Genome
ruvnet/metaharness
7-section readiness scorecard for a LOCAL repo. An agent skill from ruvnet/metaharness.
7-section repo readiness report from metaharness genome {path}.
$ npx skills add ruvnet/ruflo --skill harness-genome -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install ruvnet/ruflo harness-genome --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/ruvnet/ruflo.git skills-src && mkdir -p .claude/skills && cp -r skills-src/plugins/ruflo-metaharness/skills/harness-genome .claude/skills/harness-genome && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "harness-genome" agent skill from https://github.com/ruvnet/ruflo/tree/main/plugins/ruflo-metaharness/skills/harness-genome into .claude/skills/harness-genome/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "harness-genome", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/ruvnet/ruflo/tree/main/plugins/ruflo-metaharness/skills/harness-genomeType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add ruvnet/ruflo --skill harness-genome -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install ruvnet/ruflo harness-genome --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ruvnet/ruflo.git skills-src && mkdir -p .agents/skills && cp -r skills-src/plugins/ruflo-metaharness/skills/harness-genome .agents/skills/harness-genome && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "harness-genome" agent skill from https://github.com/ruvnet/ruflo/tree/main/plugins/ruflo-metaharness/skills/harness-genome into .agents/skills/harness-genome/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "harness-genome", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ruvnet/ruflo --skill harness-genome -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install ruvnet/ruflo harness-genome --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ruvnet/ruflo.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/plugins/ruflo-metaharness/skills/harness-genome .cursor/skills/harness-genome && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "harness-genome" agent skill from https://github.com/ruvnet/ruflo/tree/main/plugins/ruflo-metaharness/skills/harness-genome into .cursor/skills/harness-genome/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "harness-genome", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/ruvnet/ruflo.git --path plugins/ruflo-metaharness/skills/harness-genome--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add ruvnet/ruflo --skill harness-genome -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install ruvnet/ruflo harness-genome --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ruvnet/ruflo.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/plugins/ruflo-metaharness/skills/harness-genome .gemini/skills/harness-genome && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "harness-genome" agent skill from https://github.com/ruvnet/ruflo/tree/main/plugins/ruflo-metaharness/skills/harness-genome into .gemini/skills/harness-genome/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "harness-genome", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install ruvnet/ruflo harness-genomeInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add ruvnet/ruflo --skill harness-genome -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/ruvnet/ruflo.git skills-src && mkdir -p .github/skills && cp -r skills-src/plugins/ruflo-metaharness/skills/harness-genome .github/skills/harness-genome && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "harness-genome" agent skill from https://github.com/ruvnet/ruflo/tree/main/plugins/ruflo-metaharness/skills/harness-genome into .github/skills/harness-genome/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "harness-genome", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ruvnet/ruflo --skill harness-genome -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install ruvnet/ruflo harness-genome --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ruvnet/ruflo.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/plugins/ruflo-metaharness/skills/harness-genome .opencode/skills/harness-genome && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "harness-genome" agent skill from https://github.com/ruvnet/ruflo/tree/main/plugins/ruflo-metaharness/skills/harness-genome into .opencode/skills/harness-genome/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "harness-genome", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
harness-genome7-section repo readiness report from metaharness genome {path}.
Harness Genome is an agent skill from ruvnet/ruflo. 7-section repo readiness report from metaharness genome {path}. Returns repotype / agenttopology / riskscore / mcpsurface / testconfidence / publishreadiness. Pure-read; degrades gracefully (ADR-150).
Its SKILL.md is about 560 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Bioinformatics and Architecture decision records. It works with Model Context Protocol. The repository describes itself as: 🌊 The original agent harness. Deploy intelligent multi-player swarms, coordinate autonomous workflows, and build conversational AI systems. Features adaptive memory…. The licence is MIT.
5 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 6c04654. It shows what the files ask for, not the result of running them.
Pre-approves these tools, so the agent can use them without asking each time:
BashFrom allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
npxFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md. Its commands use npx, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Harness Genome loads about 558 tokens when it runs. Until then it costs about 56 tokens; SKILL.md has 201 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check noted patterns worth knowing about, such as sudo or a known installer.
allowed-tools: BashAutomated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from ruvnet/ruflo at commit 6c04654, republished under its MIT licence (© ruvnet). 201 words, ~558 tokens.
.claude/skills/harness-genome/SKILL.md (or your agent's skills folder).Companion to harness-score. Where score is a 5-dimension numeric
scorecard, genome is a 7-section categorical/numeric report covering
repo type, agent topology recommendations, risk score (0-1), MCP
surface area, test confidence (0-1), and publish readiness (0-1).
Implementation: scripts/genome.mjs.
npx metaharness genome <path> --json (60s hard timeout).{ repo_type, agent_topology[], risk_score, mcp_surface, test_confidence, publish_readiness }.verdict and
verdictExitCode. Upstream exits 1 for needs-work and 2 for blocked;
these are valid reports, so the wrapper returns them successfully.--alert-on-risk-above N: exit 1 when risk_score > N.{
"repo_type": "node_mcp_ci",
"agent_topology": ["maintainer", "tester", "security", "release"],
"risk_score": 0.27,
"mcp_surface": "remote",
"test_confidence": 0.8,
"publish_readiness": 0.9
}Ruflo's risk_score: 0.27 is low (good). publish_readiness: 0.9 is
high. The mcp_surface: "remote" reflects that ruflo's MCP servers are
hosted, not bundled.
agent_topology recommendations
drift away from a deliberate architecture choice.--alert-on-risk-above 0.5 fails the build when the repo's
risk profile crosses a threshold.harness-score — numeric readinessharness-mcp-scan — static MCP security findingsharness-threat-model — enterprise-review-grade threat model© ruvnet, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in plugins/ruflo-metaharness/skills/harness-genome of ruvnet/ruflo.
Open the folder on GitHubat commit 6c04654
Harness Genome next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Harness Genome this skillruvnet/ruflo | 74k | — | ~558 | Automated safety check: Notes | MIT | |
| Repo Genomeruvnet/metaharness | 696 | — | ~772 | Automated safety check: Pass | MIT | |
| Genomiexon-research/genomi | 484 | — | ~4k | Automated safety check: Pass | Apache-2.0 | |
| Hcls Build Agentaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | — | ~885 | Automated safety check: Pass | MIT-0 | |
| Genomilabexon-research/genomi | 484 | — | ~4.2k | Automated safety check: Pass | Apache-2.0 | |
| Tooluniverseynulihao/AgentSkillOS | 618 | 2 repos | ~2.5k | Automated safety check: Pass | None |
ruvnet/metaharness
7-section readiness scorecard for a LOCAL repo. An agent skill from ruvnet/metaharness.
exon-research/genomi
A skill your agent uses for genetics, genome source, variant, gene, phenotype, disease, screen, pharmacogenomics, and Genomi install/setup maintenance questions.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
A skill your agent uses when a developer wants to build a new healthcare or life sciences agent, structure tools and system prompts for an HCLS workflow, or create a Strands agent with…
exon-research/genomi
Run or continue patient-authorized, genome-informed GenomiLab investigations in the current Claude, Codex, or other MCP agent task.
ynulihao/AgentSkillOS
A skill your agent uses when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery.
aipoch/open-science
Evaluate and use SSH Remote Compute before choosing where to run GPU, high-memory, parallel, batch, model-inference, bioinformatics, or other long-running scientific work; supports short remote…
ruvnet/ruflo
Stores, searches, and retrieves successful patterns with HNSW-indexed semantic search so agents can reuse past solutions instead of relearning them.
ruvnet/ruflo
Runs claude-flow CLI security scans for input validation, path traversal, SQL injection, XSS, hardcoded secrets and known CVEs, and writes an audit report.
ruvnet/ruflo
Applies the SPARC method (specification, pseudocode, architecture, refinement, completion) with 17 specialized modes and multi-agent orchestration, from research to deployment.
ruvnet/ruflo
Coordinates a hierarchical swarm of specialized agents through the claude-flow CLI for work that spans several files or modules at once.
ruvnet/ruflo
Sets up and drives Ruflo, an npm-installed orchestration layer for multi-agent swarms, persistent memory, routing, hooks and its MCP tool catalog.
ruvnet/ruflo
Reference for spawning, listing, monitoring and stopping agents with claude-flow commands, with agent type families, routing codes and coordination tips.
Works with
Categories
7-section repo readiness report from metaharness genome {path}. Harness Genome is an agent skill from ruvnet/ruflo. 7-section repo readiness report from metaharness genome {path}.
Harness Genome fits situations like: tasks that involve Bioinformatics; tasks that involve Architecture decision records.
Run `npx skills add ruvnet/ruflo --skill harness-genome -a claude-code`. Or copy the skill folder (plugins/ruflo-metaharness/skills/harness-genome in ruvnet/ruflo) into .claude/skills/harness-genome in your project. Claude Code loads it when a task matches its description.
Run `npx skills add ruvnet/ruflo --skill harness-genome -a codex`. Or copy the skill folder (plugins/ruflo-metaharness/skills/harness-genome in ruvnet/ruflo) into .agents/skills/harness-genome in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add ruvnet/ruflo --skill harness-genome -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/harness-genome, .gemini/skills/harness-genome, .github/skills/harness-genome and .opencode/skills/harness-genome in your project.
Going by SKILL.md and its folder, Harness Genome needs the command-line tools its instructions call (npx). Our summary lists: Node.js. Its frontmatter pre-approves these tools: Bash.
SKILL.md contains no URLs. Its commands use npx, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found notes only (pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. Review the folder before installing.
Harness Genome is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 558 tokens (SKILL.md is roughly 2.2k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Harness Genome: Repo Genome (ruvnet/metaharness, 696 stars), Genomi (exon-research/genomi, 484 stars), Hcls Build Agent (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars) and Genomilab (exon-research/genomi, 484 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
ruvnet (a GitHub user) maintains it in ruvnet/ruflo, which has 74,222 GitHub stars. The repository holds 265 skills in this directory. The repository was last updated on October 10, 2026.
Source: ruvnet/ruflo on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.