Topic · Research & Science
Best bioinformatics skills, page 24
Bioinformatics skills, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1105 | omicsViewer visualizes ExpressionSet (or SummarizedExperiment) in an interactive way. | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1106 | 1106.Bioconductor Ompbam This packages provides C++ header files for developers wishing to create R packages that processes BAM files. | bioMate-AI/ | 804 | — | ~993 | Automated safety check: Pass | Unknown | 3 mo ago |
| 1107 | The ORFhunteR package is a R and C++ library for an automatic determination and annotation of open reading frames (ORF) in a large set of RNA molecules. | bioMate-AI/ | 804 | — | ~1.9k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1108 | PhIPData defines an S4 class for phage-immunoprecipitation sequencing (PhIP-seq) experiments. | bioMate-AI/ | 804 | — | ~1.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1109 | 1109.Bioconductor Ptairms This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and… | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1110 | 1110.Bioconductor Rblast Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1111 | This package performs differential pattern analysis for Ribo-seq data. | bioMate-AI/ | 804 | — | ~1.8k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1112 | 1112.Bioconductor Scanmir A set of tools for working with miRNA affinity models (KdModels), efficiently scanning for miRNA binding sites, and predicting target repression. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1113 | The package comprises a set of pretrained machine learning models to predict basic immune cell types. | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1114 | 1114.Bioconductor Scarray Provides large-scale single-cell omics data manipulation using Genomic Data Structure (GDS) files. | bioMate-AI/ | 804 | — | ~968 | Automated safety check: Pass | Unknown | 3 mo ago |
| 1115 | 1115.Bioconductor Scater A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization. | bioMate-AI/ | 804 | — | ~4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1116 | 1116.Bioconductor Sccomp A robust and outlier-aware method for testing differential tissue composition from single-cell data. | bioMate-AI/ | 804 | — | ~1.9k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1117 | We present a statistical simulator, scDesign3, to generate realistic single-cell and spatial omics data, including various cell states, experimental designs, and feature modalities, by learning… | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1118 | 1118.Bioconductor Scran Implements miscellaneous functions for interpretation of single-cell RNA-seq data. | bioMate-AI/ | 804 | — | ~4.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1119 | A post hoc cell type classification tool to fine-tune cell type annotations generated by any cell type classification procedure with semi-supervised learning algorithm AdaSampling technique. | bioMate-AI/ | 804 | — | ~818 | Automated safety check: Pass | Unknown | 3 mo ago |
| 1120 | 1120.Bioconductor Sechm sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1121 | 1121.Bioconductor Sgcp SGC is a semi-supervised pipeline for gene clustering in gene co-expression networks. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1122 | 1122.Bioconductor Simbu SimBu can be used to simulate bulk RNA-seq datasets with known cell type fractions. | bioMate-AI/ | 804 | — | ~1.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1123 | Image segmentation is the process of identifying the borders of individual objects (in this case cells) within an image. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1124 | Defines a S4 class for storing data from single-cell experiments. | bioMate-AI/ | 804 | — | ~4.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1125 | SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1126 | The analysis and visualization of alternative splicing (AS) events from RNA sequencing data remains challenging. | bioMate-AI/ | 804 | — | ~2.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1127 | SpotClean is a computational method to adjust for spot swapping in spatial transcriptomics data. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1128 | Spatially-aware quality control (QC) software for both spot-level and artifact-level QC in spot-based spatial transcripomics, such as 10x Visium. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1129 | 1129.Bioconductor Standr standR is an user-friendly R package providing functions to assist conducting good-practice analysis of Nanostring's GeoMX DSP data. | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1130 | 1130.Bioconductor Statial Statial is a suite of functions for identifying changes in cell state. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1131 | Generate SuperSigs (supervised mutational signatures) from single nucleotide variants in the cancer genome. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1132 | syntenet can be used to infer synteny networks from whole-genome protein sequences and analyze them. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1133 | 1133.Bioconductor Tanggle Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. | bioMate-AI/ | 804 | — | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1134 | A first step in the data analysis of Mass Spectrometry (MS) based proteomics data is to identify peptides and proteins. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1135 | This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. | bioMate-AI/ | 804 | — | ~1.8k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1136 | Variance-stabilizing transformations help with the analysis of heteroskedastic data (i.e., data where the variance is not constant, like count data). | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1137 | 1137.Bioconductor Treekor treekoR is a novel framework that aims to utilise the hierarchical nature of single cell cytometry data to find robust and interpretable associations between cell subsets and patient clinical end… | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1138 | 1138.Bioconductor Visse This package enables the interpretation and analysis of results from a gene set enrichment analysis using network-based and text-mining approaches. | bioMate-AI/ | 804 | — | ~1.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1139 | 1139.Bioconductor Voyager SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial single-cell genomics data. | bioMate-AI/ | 804 | — | ~1.6k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1140 | 1140.Bioconductor Zenith Zenith performs gene set analysis on the result of differential expression using linear (mixed) modeling with dream by considering the correlation between gene expression traits. | bioMate-AI/ | 804 | — | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 1141 | Codex adaptation of the OpenClaw Medical Skills library. An agent skill from aiskillstore/marketplace. | aiskillstore/ | 430 | — | ~2.1k | Automated safety check: Pass | No licence | today |
| 1142 | ToolUniverse workflow — Expression Data Retrieval. An agent skill from lamm-mit/scienceclaw. | lamm-mit/ | 244 | — | ~2.6k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 1143 | 1143.Polygenic Risk Score ToolUniverse workflow — Polygenic Risk Score. An agent skill from lamm-mit/scienceclaw. | lamm-mit/ | 244 | — | ~3.7k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 1144 | 1144.Sequence Analyze biological sequences using Biopython - translate, align, parse FASTA/GenBank | lamm-mit/ | 244 | — | ~1.1k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 1145 | 1145.Tooluniverse Access 1000+ scientific tools from Harvard's ToolUniverse — bioinformatics, drug discovery, genomics, clinical research, and more | lamm-mit/ | 244 | — | ~950 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 1146 | 1146.Genome Compare Compare your genome to George Church (PGP-1) and estimate ancestry composition | aAAaqwq/ | 105 | 1 repo | ~691 | Automated safety check: Pass | MIT | today |
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