Agent skill

Obsidian Literature Workflow

by Galaxy-Dawn in Galaxy-Dawn/claude-scholar

Runs a project literature review in an Obsidian vault: paper notes in Sources/Papers feed Knowledge synthesis, a Writing handoff and a default literature canvas.

MITAuto-check passedResearch & Science

Install Obsidian Literature Workflow

skills CLI
$ npx skills add Galaxy-Dawn/claude-scholar --skill obsidian-literature-workflow -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install Galaxy-Dawn/claude-scholar obsidian-literature-workflow --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/Galaxy-Dawn/claude-scholar.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/obsidian-literature-workflow .claude/skills/obsidian-literature-workflow && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
obsidian-literature-workflow
GitHub stars
5.7k
Token cost
~431 tokens
SKILL.md length
140 words
Files
11 (incl. scripts, references)
Skills in repo
34
Repo updated
First seen
Licence
MIT

At a glance

Runs a project literature review in an Obsidian vault: paper notes in Sources/Papers feed Knowledge synthesis, a Writing handoff and a default literature canvas.

  • Running a structured literature review inside an Obsidian vault
  • SKILL.md covers Main flow, Default outputs, Rules and Read next
  • Runs Python scripts from its folder
  • Turning paper notes into a method taxonomy and a research gap list

What it does

The skill owns the literature workflow for a project vault. Work flows from Sources/Papers to Knowledge, then Writing, with Maps/literature.canvas as the default graph. Default outputs are one note per paper, a Literature Overview, Method Taxonomy, Research Gaps and Claim Map in Knowledge, a related-work draft and comparison matrix in Writing, and the canvas.

Rules keep the layers separate. Paper notes stay in Sources/Papers, synthesis never lives inside source notes, every synthesis note links its supporting sources and every research gap carries evidence. A promoted claim needs an Evidence Record ID, source type, claim strength, allowed wording and forbidden stronger wording before it can flow into writing, and the related-work draft and comparison matrix are produced only once promoted claims pass that evidence gate. Weak paper notes, abstract-only pages and web placeholders can update coverage or the To-Read list but cannot support conclusions.

Reference files cover the paper note schema, literature overview, claim extraction, method taxonomy, research gaps, canvas and graph workflows, and Python scripts build the literature canvas and graph. No extra canvases are generated unless requested.

When your agent uses it

  • Running a structured literature review inside an Obsidian vault
  • Turning paper notes into a method taxonomy and a research gap list
  • Building the default literature canvas from source notes
  • Preparing evidence-backed claims for a related-work draft

Example prompts

  • “Review the papers in Sources/Papers and update the Method Taxonomy and Research Gaps notes.”
  • “Rebuild Maps/literature.canvas from the current paper notes.”
  • “Which claims in the Claim Map pass the evidence gate and can go into the related-work draft?”

Requirements

  • An Obsidian vault with Sources, Knowledge, Writing and Maps folders
  • Python, for the canvas and graph scripts

What it can do on your machine

Read from SKILL.md and the folder at commit 9037873. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships 2 files in scripts/ (Python), which the agent can run.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Obsidian Literature Workflow loads about 431 tokens when it runs, and up to ~1.8k if it reads all its reference files. Until then it costs about 59 tokens; SKILL.md has 140 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~59
When it runs · the whole SKILL.md, loaded when a task matches
~431
With references · SKILL.md plus every file in references/, read only if the agent opens them
~1.8k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.

SKILL.md

The full file from Galaxy-Dawn/claude-scholar at commit 9037873, republished under its MIT licence (© Galaxy-Dawn). 140 words, ~431 tokens.

Download SKILL.mdSave it as .claude/skills/obsidian-literature-workflow/SKILL.md (or your agent's skills folder). This skill also uses 10 other files; get the full folder from GitHub.
name
obsidian-literature-workflow
description
Use this skill for project-scoped literature review built on Sources/Papers, with synthesis landing in Knowledge, writing handoff in Writing, and the default literature canvas under Maps/literature.canvas.
version
1.0.0

Obsidian Literature Workflow

This skill owns the project literature workflow.

Main flow

text
Sources/Papers/ -> Knowledge/ -> Writing/ -> Maps/literature.canvas

Default outputs

  • Sources/Papers/{paper-slug}.md
  • Knowledge/Literature Overview.md
  • Knowledge/Method Taxonomy.md
  • Knowledge/Research Gaps.md
  • Knowledge/Claim Map.md
  • Writing/related-work-draft.md only after promoted claims pass the evidence gate
  • Writing/comparison-matrix.md only after promoted claims pass the evidence gate
  • Maps/literature.canvas

Rules

  • paper notes stay under Sources/Papers/
  • literature synthesis does not live inside source notes
  • every synthesis note must link its supporting source notes
  • every research gap must carry evidence
  • every promoted claim must carry an Evidence Record ID, source type, claim strength, allowed wording, and forbidden stronger wording when it may flow into writing or rebuttal
  • weak paper notes, abstract-only pages, and webpage placeholders may update coverage or To-Read, but they cannot support Knowledge or Writing conclusions
  • default graph output is Maps/literature.canvas
  • do not generate extra canvases unless explicitly requested
  • references/PAPER-NOTE-SCHEMA.md
  • references/LITERATURE-OVERVIEW.md
  • references/CLAIM-EXTRACTION.md
  • references/METHOD-TAXONOMY.md
  • references/RESEARCH-GAPS.md
  • references/LITERATURE-CANVAS.md

© Galaxy-Dawn, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

SKILL.md and 10 other files (scripts, references) in skills/obsidian-literature-workflow of Galaxy-Dawn/claude-scholar.

  • SKILL.md
  • references/CANVAS-WORKFLOW.md
  • references/CLAIM-EXTRACTION.md
  • references/GRAPH-WORKFLOW.md
  • references/LITERATURE-CANVAS.md
  • references/LITERATURE-OVERVIEW.md
  • references/METHOD-TAXONOMY.md
  • references/PAPER-NOTE-SCHEMA.md
  • references/RESEARCH-GAPS.md
  • scripts/build_literature_canvas.py
  • scripts/build_literature_graph.py

Open the folder on GitHubat commit 9037873

Compare with similar skills

Obsidian Literature Workflow next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Obsidian Literature Workflow compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Obsidian Literature Workflow this skillGalaxy-Dawn/claude-scholar5.7k—~431Automated safety check: PassMIT
Conference Paper Recommenderjuliye2025/evil-read-arxiv1.7k—~2.5kAutomated safety check: PassNone
Daily arXiv Paper Briefjuliye2025/evil-read-arxiv1.7k—~4.3kAutomated safety check: PassNone
Paper and Web Source Analyzerjuliye2025/evil-read-arxiv1.7k—~715Automated safety check: PassNone
Paper Figure Extractorjuliye2025/evil-read-arxiv1.7k—~298Automated safety check: PassNone
Scholar RAGjoshzyj/open-scholar-skill168—~7.4kAutomated safety check: NotesCustom licence

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Works with

Questions about Obsidian Literature Workflow

What does Obsidian Literature Workflow do?

Runs a project literature review in an Obsidian vault: paper notes in Sources/Papers feed Knowledge synthesis, a Writing handoff and a default literature canvas. The skill owns the literature workflow for a project vault.canvas as the default graph.

When should I use Obsidian Literature Workflow?

Obsidian Literature Workflow fits situations like: running a structured literature review inside an Obsidian vault; turning paper notes into a method taxonomy and a research gap list; building the default literature canvas from source notes; preparing evidence-backed claims for a related-work draft.

How do I install Obsidian Literature Workflow in Claude Code?

Run `npx skills add Galaxy-Dawn/claude-scholar --skill obsidian-literature-workflow -a claude-code`. Or copy the skill folder (skills/obsidian-literature-workflow in Galaxy-Dawn/claude-scholar) into .claude/skills/obsidian-literature-workflow in your project. Claude Code loads it when a task matches its description.

How do I install Obsidian Literature Workflow in Codex?

Run `npx skills add Galaxy-Dawn/claude-scholar --skill obsidian-literature-workflow -a codex`. Or copy the skill folder (skills/obsidian-literature-workflow in Galaxy-Dawn/claude-scholar) into .agents/skills/obsidian-literature-workflow in your project. Codex loads it when a task matches its description.

Can I use Obsidian Literature Workflow in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add Galaxy-Dawn/claude-scholar --skill obsidian-literature-workflow -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/obsidian-literature-workflow, .gemini/skills/obsidian-literature-workflow, .github/skills/obsidian-literature-workflow and .opencode/skills/obsidian-literature-workflow in your project.

What does Obsidian Literature Workflow need to run?

Going by SKILL.md and its folder, Obsidian Literature Workflow needs Python for the scripts in its folder. Our summary lists: An Obsidian vault with Sources, Knowledge, Writing and Maps folders; Python, for the canvas and graph scripts.

Does Obsidian Literature Workflow access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Obsidian Literature Workflow safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.

What licence does Obsidian Literature Workflow use?

Obsidian Literature Workflow is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Obsidian Literature Workflow use?

About 431 tokens (SKILL.md is roughly 1.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 1.3k tokens, read only when the agent opens those files.

What are the alternatives to Obsidian Literature Workflow?

Skills that share tags, products or a category with Obsidian Literature Workflow: Conference Paper Recommender (juliye2025/evil-read-arxiv, 1.7k stars), Daily arXiv Paper Brief (juliye2025/evil-read-arxiv, 1.7k stars), Paper and Web Source Analyzer (juliye2025/evil-read-arxiv, 1.7k stars) and Paper Figure Extractor (juliye2025/evil-read-arxiv, 1.7k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Obsidian Literature Workflow?

Galaxy-Dawn (a GitHub user) maintains it in Galaxy-Dawn/claude-scholar, which has 5,725 GitHub stars. The repository holds 34 skills in this directory. The repository was last updated on September 23, 2026.

Source: Galaxy-Dawn/claude-scholar on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.