For researchers

Classify germline variants from VCF/BCF files according to the ACMG/AMP 2015 28-criteria evidence framework and generate clinical-grade interpretation reports with per-variant evidence audit trails…

ClawBio/ClawBio

Deterministic CRISPR screen hit ranking from local guide-level count tables

ClawBio/ClawBio

Summarise pre-computed differential expression results with ranked gene lists, biological themes, and publication-ready interpretation.

ClawBio/ClawBio

Rich downstream visualisation and reporting for bulk RNA-seq differential expression and scRNA marker/contrast outputs.

ClawBio/ClawBio

Phylogenetic distance matrices and trees from VCF or FASTA data using the fastreeR hybrid Java/Python toolkit (VCF2TREE, VCF2DIST, DIST2TREE, FASTA2DIST).

ClawBio/ClawBio

Flow.bio API bridge — authenticate, browse pipelines/samples/projects, search, upload data, launch pipeline executions, and check run status on any Flow instance.

ClawBio/ClawBio

Score genetic compatibility across all male-female pairings in a Genomebook generation

ClawBio/ClawBio

End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing.

ClawBio/ClawBio

Import DRAGEN-exported Illumina result bundles into ClawBio for local tertiary analysis and downstream routing.

ClawBio/ClawBio

Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build a citation graph — all locally, with a reproducibility bundle.

ClawBio/ClawBio

Compute epigenetic age from DNA methylation arrays using PyAging clocks from GEO accessions or local files.

ClawBio/ClawBio

Aggregates QC reports from any bioinformatics tool outputs (FastQC, fastp, STAR, Picard, samtools, etc.) into a single MultiQC HTML report plus a ClawBio markdown summary with per-sample QC metrics.

ClawBio/ClawBio

Compute organ-specific biological age from Olink proteomic data using Goeminne et al.

ClawBio/ClawBio

Differential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant and DIA-NN output.

ClawBio/ClawBio

Blood RNA-seq expression-outlier detection for rare-disease diagnostics.

ClawBio/ClawBio

Produce offspring genomes from parent pairs via meiotic recombination, mutation, and clinical evaluation

ClawBio/ClawBio

Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional CellTypist annotation, optional latent downstream mode from…

ClawBio/ClawBio

NGS read QC, alignment, and BAM processing pipeline. An agent skill from ClawBio/ClawBio.

ClawBio/ClawBio

Evidence-grounded target validation scoring with GO/NO-GO decisions for drug discovery campaigns

ClawBio/ClawBio

Build, query, and analyse biomedical knowledge graphs in TuringDB, a columnar graph database with git-like versioning.

ClawBio/ClawBio

Annotate VCF variants with Ensembl VEP REST, ClinVar significance, gnomAD/population frequency context, and prioritized variant ranking.

ClawBio/ClawBio

Annotate VCF variants with Ensembl VEP, ClinVar, and gnomAD.

ClawBio/ClawBio

Generates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation summary, pharmacogenomic alerts, and follow-up recommendations.

ClawBio/ClawBio

Generates professional clinical PDF reports in Spanish from WES (Whole Exome Sequencing) data with clinical interpretation, pharmacogenomic alerts, and follow-up recommendations.

ClawBio/ClawBio

Guides protocol selection, input preparation, pricing checks, and browser ordering on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio).

K-Dense-AI/scientific-agent-skills

A skill your agent uses when a developer needs to conduct systematic literature searches, find research papers, extract content from publications, or build evidence summaries from biomedical…

aws-samples/amazon-bedrock-agents-healthcare-lifesciences

Personal book journal — track books the user wants to read or has read, prompt for impressions when they finish one, capture their words verbatim, and surface earlier reactions when they want to…

receptron/mulmoclaude

Maintain package-level agentmap.md files as outline-level maps of the real file tree and core responsibilities.

MatrixAges/polywise

Interact with your Zotero library to sync references, add citations by DOI/ISBN/PMID, and manage PDFs.

ShZhao27208/Aut_Sci_Write

当用户明确要求"从文件/图片/网页/描述中提取综述主题"、"生成主题+关键词+核心问题结构化输出"，或要求使用旧名 get-review-theme skill 时使用。支持文件（PDF/Word/Markdown/Tex）、文件夹、图片、自然语言描述、网页 URL 等多种输入源，自动识别输入类型并提取内容，生成可直接用于 research-literature-review…

huangwb8/ChineseResearchLaTeX

Merge returned or ready branches into main: one independent review, one fix round, then pnpm pr:land for each branch (it queues them and merges green ones behind one CI run) or an integration bundle…

wlsdks/ontology-atlas

Two-stage paper screening - score OpenAlex abstracts, then deep dive into OA full text for specific data extraction

wentorai/Research-Claw

Maintain a file-first, auditable Markdown knowledge base with stable pages, sources, wikilinks, backlinks, indexes, freshness, and reviewable health reports.

holon-run/holon

Root-cause a failing or wrong empirical result with a disciplined reproduce → minimise → hypothesise → instrument → fix loop, instead of guessing-and-poking.

pedrohcgs/claude-code-my-workflow

Scaffold a research grant proposal (NSF, NIH, ERC, or foundation) by composing existing primitives — pulls identification strategy from an /interview-me spec, delegates the data-management plan to…

pedrohcgs/claude-code-my-workflow

Interactive interview that formalizes a fuzzy research idea into a structured spec (RQ, hypotheses, identification, data needs, empirical strategy).

pedrohcgs/claude-code-my-workflow

Structured literature search + synthesis with citation extraction, thematic clustering, and gap identification.

pedrohcgs/claude-code-my-workflow

Compute statistical power, required sample size, and minimum detectable effect (MDE) for a study design, then write a registry-ready power section.

pedrohcgs/claude-code-my-workflow

Draft a structured preregistration document (OSF, AsPredicted, or AEA RCT Registry style) from a research spec or free-form study description.

pedrohcgs/claude-code-my-workflow

Assemble a submission-ready replication package to the AEA Data and Code Availability Standard (DCAS) / openICPSR / Social Science Reproduction Platform expectations — standard replication README…

pedrohcgs/claude-code-my-workflow

Generate structured research questions, testable hypotheses, and candidate empirical strategies from a topic, phenomenon, or dataset description.

pedrohcgs/claude-code-my-workflow

Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types.

pedrohcgs/claude-code-my-workflow

Mechanize Pattern 15 — the seven-pass adversarial review protocol for academic manuscripts.

pedrohcgs/claude-code-my-workflow

End-to-end Stata replication pipeline — scaffolds numbered .do files in scripts/stata/, executes them via the stata-mcp MCP server, captures logs and outputs to output/, and produces…

pedrohcgs/claude-code-my-workflow

Run Chain-of-Verification (CoVe) on a draft or a block of text with factual claims.

pedrohcgs/claude-code-my-workflow

Light 科研主线第 4 步·审 idea：以顶会审稿人标准严审 idea，撞车/无创新 fatal flaw 一票否决(critical 门)， 逼出真能发表的 idea。何时用：用户问"这 idea 行不行/够不够新/能不能发""帮我严审/挑刺/找致命问题" / idea 定稿前把关 / 收到 idea-generation 的候选要审 / 怀疑撞车(被人做过)。触发词：审 idea /…

Light0305/Light-skills

Light 科研主线第 5 步·研究方案与实验设计：把 idea-critique 放行的 idea 与 data feasibility 拆成能真执行、能写进论文、 能复现的 question/estimand、实验矩阵与预注册包。何时用：idea 已通过审查要落地 / 要设计实验·消融·对比·敏感性· 泛化·鲁棒性 / 写研究方案 PROJECTPLAN / 锁 primary…

Light0305/Light-skills

Build auditable peer-review revision and author-response packages for Light stage 13.

Light0305/Light-skills