Complexa Design
NVIDIA-BioNeMo/bionemo-agent-toolkit
End-to-end Proteina-Complexa design pipeline driver. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit.
Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types.
$ npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install pedrohcgs/claude-code-my-workflow scaffold-exercises --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/pedrohcgs/claude-code-my-workflow.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.claude/skills/scaffold-exercises .claude/skills/scaffold-exercises && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "scaffold-exercises" agent skill from https://github.com/pedrohcgs/claude-code-my-workflow/tree/main/.claude/skills/scaffold-exercises into .claude/skills/scaffold-exercises/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scaffold-exercises", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/pedrohcgs/claude-code-my-workflow/tree/main/.claude/skills/scaffold-exercisesType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install pedrohcgs/claude-code-my-workflow scaffold-exercises --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/pedrohcgs/claude-code-my-workflow.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.claude/skills/scaffold-exercises .agents/skills/scaffold-exercises && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "scaffold-exercises" agent skill from https://github.com/pedrohcgs/claude-code-my-workflow/tree/main/.claude/skills/scaffold-exercises into .agents/skills/scaffold-exercises/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scaffold-exercises", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install pedrohcgs/claude-code-my-workflow scaffold-exercises --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/pedrohcgs/claude-code-my-workflow.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.claude/skills/scaffold-exercises .cursor/skills/scaffold-exercises && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "scaffold-exercises" agent skill from https://github.com/pedrohcgs/claude-code-my-workflow/tree/main/.claude/skills/scaffold-exercises into .cursor/skills/scaffold-exercises/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scaffold-exercises", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/pedrohcgs/claude-code-my-workflow.git --path .claude/skills/scaffold-exercises--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install pedrohcgs/claude-code-my-workflow scaffold-exercises --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/pedrohcgs/claude-code-my-workflow.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.claude/skills/scaffold-exercises .gemini/skills/scaffold-exercises && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "scaffold-exercises" agent skill from https://github.com/pedrohcgs/claude-code-my-workflow/tree/main/.claude/skills/scaffold-exercises into .gemini/skills/scaffold-exercises/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scaffold-exercises", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install pedrohcgs/claude-code-my-workflow scaffold-exercisesInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/pedrohcgs/claude-code-my-workflow.git skills-src && mkdir -p .github/skills && cp -r skills-src/.claude/skills/scaffold-exercises .github/skills/scaffold-exercises && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "scaffold-exercises" agent skill from https://github.com/pedrohcgs/claude-code-my-workflow/tree/main/.claude/skills/scaffold-exercises into .github/skills/scaffold-exercises/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scaffold-exercises", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install pedrohcgs/claude-code-my-workflow scaffold-exercises --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/pedrohcgs/claude-code-my-workflow.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.claude/skills/scaffold-exercises .opencode/skills/scaffold-exercises && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "scaffold-exercises" agent skill from https://github.com/pedrohcgs/claude-code-my-workflow/tree/main/.claude/skills/scaffold-exercises into .opencode/skills/scaffold-exercises/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scaffold-exercises", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
scaffold-exercisesScaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types.
Scaffold Exercises is an agent skill from pedrohcgs/claude-code-my-workflow. Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types. Use when user says "make a problem set on X", "scaffold exercises for this lecture", "create practice problems", "generate homework with a solution key", "build a graded assignment on topic Y". Emits a clean student set plus a separate solution key — NOT for grading submissions or auto-checking student answers.
Its SKILL.md is about 2k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Project scaffolding. The repository describes itself as: A ready-to-fork Claude Code template for academics using LaTeX/Beamer + R. Multi-agent review, quality gates, adversarial QA, and replication protocols. The licence is MIT.
4 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit ae72617. It shows what the files ask for, not the result of running them.
Pre-approves these tools, so the agent can use them without asking each time:
ReadGrepGlobWriteBashFrom allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md (its code samples are markdown).
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Scaffold Exercises loads about 2k tokens when it runs. Until then it costs about 123 tokens; SKILL.md has 830 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check noted patterns worth knowing about, such as sudo or a known installer.
allowed-tools: Read, Grep, Glob, Write, BashAutomated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from pedrohcgs/claude-code-my-workflow at commit ae72617, republished under its MIT licence (© pedrohcgs). 830 words, ~2,009 tokens.
.claude/skills/scaffold-exercises/SKILL.md (or your agent's skills folder)./scaffold-exercises — Problem Set ScaffolderGenerate a graded problem set as two files: a clean student set (problems only) and a solution key (worked solutions + a one-line explainer per problem). Pattern imported from mattpocock/skills, adapted for economics teaching — the primary lens is graded coursework that mixes derivation, estimation, and code.
Input: $ARGUMENTS — a topic (e.g., "instrumental variables", "consumer theory", "quantile regression") and optional flags. See Flags.
Do not use this to grade submissions, auto-check answers, or build a timed exam — it scaffolds practice/graded material, not assessment infrastructure.
| Type | What the student does | Solution artifact |
|---|---|---|
| analytical | Derive / prove / characterize (theory: optimization, identification, comparative statics) | Step-by-step derivation with the key lemma named |
| empirical | Estimate + interpret on a provided or simulated dataset | Expected estimate, sign/magnitude reasoning, common-mistake note |
| coding | Implement an estimator or simulation in R or Stata | Runnable reference snippet + expected output shape |
If no dataset is supplied for an empirical problem, generate a small simulated one with a fixed seed (YYYYMMDD) so the answer key is deterministic and reproducible.
Read any source material the user points at (lecture .tex/.qmd, a paper, a dataset header) and produce a Pre-Flight Report before generating problems:
## Pre-Flight Report — Problem Set
**Topic:** [topic]
**Source(s) read:** [lecture/paper/dataset — one-line takeaway each]
**Difficulty:** intro | core | advanced
**Counts by type:** analytical=N, empirical=N, coding=N (total = `--count`)
**Dataset:** [provided path | simulated with seed YYYYMMDD | none]
**Learning objectives:** [2-4 bullets the set should exercise]Resolve every flag here (interactive choices are gathered before generation, not mid-run). If the topic is too vague to write objectives, ask one clarifying question and stop. Otherwise proceed.
For each problem, write a number, a section heading, the prompt, and any data/notation it needs. Conventions:
create-lecture's pedagogy.For every problem, write:
Bash + R/Stata are available, execute the snippet and paste real output.Emit two files (paths configurable; default under quality_reports/teaching/, beside /respond-to-eval's teaching plans. A new top-level directory such as exercises/ fails scripts/check-repo-hygiene.py once committed, unless it is added to that script's ROOT_ALLOW_DIRS):
quality_reports/teaching/<topic-slug>_problems.md — the student set: sections, problems, any data, NO answers.quality_reports/teaching/<topic-slug>_solutions.md — the solution key: each problem restated, its worked solution, and its explainer.The split is load-bearing: never leak a solution into the student file. With --no-solutions, write only the student set and stop.
Student set:
# Problem Set: [Topic] (Difficulty: core)
## Section 1 — Analytical
**1.** [Motivation sentence.] [Prompt.]
## Section 2 — Empirical
**2.** Using `data/<file>` (vars: ...), [estimate + interpret prompt].
## Section 3 — Coding (R)
**3.** [Implement-X prompt.]Solution key mirrors the numbering, adding ### Solution and > Why this matters: blocks per problem. Close your chat reply with a one-line manifest: files written, problem count by type, and whether code solutions were executed or only drafted.
--difficulty — intro | core | advanced (default core); calibrates step depth as in Phase 1.--count — total number of problems (default 6); split across types per the Pre-Flight counts.--types — comma-separated subset of analytical,empirical,coding (default all three).--dataset — path to a real dataset for empirical problems; omit to simulate one with a seeded DGP.--no-solutions — write only the student set; skip the solution key (Phase 2/3 key file)..claude/skills/create-lecture/SKILL.md — build the lecture these exercises practice; shares notation-reuse + motivation-first conventions..claude/skills/data-analysis/SKILL.md — for empirical problems whose reference solution needs a full R estimation pipeline..claude/skills/simulation-study/SKILL.md — when a problem demonstrates an estimator's finite-sample behavior; reuse its seeded-DGP discipline..claude/skills/lit-review/SKILL.md — source advanced problems from current papers on the topic..claude/skills/interview-me/SKILL.md — turn a fuzzy "I want a set on…" into concrete learning objectives first.templates/skill-template.md — house style for authoring/extending this skill./deploy).© pedrohcgs, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in .claude/skills/scaffold-exercises of pedrohcgs/claude-code-my-workflow.
Open the folder on GitHubat commit ae72617
Scaffold Exercises next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Scaffold Exercises this skillpedrohcgs/claude-code-my-workflow | 1.7k | — | ~2k | Automated safety check: Notes | MIT | |
| Complexa DesignNVIDIA-BioNeMo/bionemo-agent-toolkit | 479 | — | ~4.1k | Automated safety check: Notes | Custom licence | |
| Gtdscunning1975/MixtapeTools | 474 | — | ~2.9k | Automated safety check: Notes | None | |
| RfdiffusionPKU-YuanGroup/OpenAI4S | 622 | — | ~2.2k | Automated safety check: Pass | MIT | |
| Intake ProjectAperivue/medsci-skills | 333 | — | ~1.6k | Automated safety check: Pass | MIT | |
| Draft PolisherWILLOSCAR/research-units-pipeline-skills | 513 | — | ~2.8k | Automated safety check: Pass | None |
NVIDIA-BioNeMo/bionemo-agent-toolkit
End-to-end Proteina-Complexa design pipeline driver. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit.
scunning1975/MixtapeTools
Warrant-first research GTD system. An agent skill from scunning1975/MixtapeTools.
PKU-YuanGroup/OpenAI4S
Generate de novo protein backbones with RFdiffusion for protein-target binders, hotspot-conditioned interfaces, motif scaffolding, partial diffusion, or symmetric assemblies.
Aperivue/medsci-skills
A skill your agent uses when starting or inheriting a radiology research project and need to know what it is.
WILLOSCAR/research-units-pipeline-skills
Audit-style editing pass for output/DRAFT.md: remove template boilerplate, improve coherence, and enforce citation anchoring.
brycewang-stanford/Auto-Empirical-Research-Skills
Scaffolds a method-specific analysis notebook (DiD, IV, RDD, LASSO, Panel FE) with boilerplate.
pedrohcgs/claude-code-my-workflow
Adversarial 5-7 question challenge to a deck's pedagogical choices — ordering, prerequisites, cognitive load, motivation.
pedrohcgs/claude-code-my-workflow
Qualify a check before it is allowed to clear anything — prove it can detect the failure it is meant to catch.
pedrohcgs/claude-code-my-workflow
Compile a Beamer LaTeX slide deck with XeLaTeX (3 passes + bibtex).
pedrohcgs/claude-code-my-workflow
Show current context status and session health. An agent skill from pedrohcgs/claude-code-my-workflow.
pedrohcgs/claude-code-my-workflow
Snapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt /…
pedrohcgs/claude-code-my-workflow
Save a structured state snapshot before stopping or handing off.
Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types. Scaffold Exercises is an agent skill from pedrohcgs/claude-code-my-workflow. Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types.
Scaffold Exercises fits situations like: user says make a problem set on X; scaffold exercises for this lecture; create practice problems; generate homework with a solution key.
Run `npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a claude-code`. Or copy the skill folder (.claude/skills/scaffold-exercises in pedrohcgs/claude-code-my-workflow) into .claude/skills/scaffold-exercises in your project. Claude Code loads it when a task matches its description.
Run `npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a codex`. Or copy the skill folder (.claude/skills/scaffold-exercises in pedrohcgs/claude-code-my-workflow) into .agents/skills/scaffold-exercises in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add pedrohcgs/claude-code-my-workflow --skill scaffold-exercises -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/scaffold-exercises, .gemini/skills/scaffold-exercises, .github/skills/scaffold-exercises and .opencode/skills/scaffold-exercises in your project.
SKILL.md names no scripts, command-line tools or credentials: Scaffold Exercises is instructions for the agent only. Its frontmatter pre-approves these tools: Read, Grep, Glob, Write, Bash.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found notes only (pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. Review the folder before installing.
Scaffold Exercises is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 2k tokens (SKILL.md is roughly 8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Scaffold Exercises: Complexa Design (NVIDIA-BioNeMo/bionemo-agent-toolkit, 479 stars), Gtd (scunning1975/MixtapeTools, 474 stars), Rfdiffusion (PKU-YuanGroup/OpenAI4S, 622 stars) and Intake Project (Aperivue/medsci-skills, 333 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
pedrohcgs (a GitHub user) maintains it in pedrohcgs/claude-code-my-workflow, which has 1,655 GitHub stars. The repository holds 59 skills in this directory. The repository was last updated on September 27, 2026.
Source: pedrohcgs/claude-code-my-workflow on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.