aipoch/medical-research-skills agent skills, page 2

Diffusion-based molecular docking to predict 3D ligand–protein binding poses (blind docking) with confidence scoring; use when you need pose prediction for drug discovery or virtual screening.

aipoch/medical-research-skills

A skill your agent uses when analyzing bulk RNA-seq or microarray expression data to identify differentially expressed genes between two biological groups (case vs control), with volcano plots and…

aipoch/medical-research-skills

A skill your agent uses when drafting patient discharge summaries, creating personalized discharge instructions, simulating post-discharge outcomes, reducing hospital readmissions, or optimizing…

aipoch/medical-research-skills

Generate hospital discharge summaries from admission data, hospital course, diagnoses, procedures, and follow-up plans; use when a structured discharge document is required from clinical notes.

aipoch/medical-research-skills

Composes a Discussion around key findings, mechanisms, clinical relevance, and limitations.

aipoch/medical-research-skills

Structures and writes discussion sections for academic papers and research reports.

aipoch/medical-research-skills

Programmatic access to DrugBank drug and target data; use when you need to download, parse, and analyze DrugBank XML for properties, interactions, pathways, and pharmacology.

aipoch/medical-research-skills

A skill your agent uses when selecting predictive genes or other molecular features from bulk expression matrices for binary case-vs-control classification with elastic net logistic regression…

aipoch/medical-research-skills

Access Ensembl REST API for vertebrate genomic data; use when you need gene/ID lookups, sequence retrieval, variant effect prediction (VEP), or homology/assembly coordinate mapping.

aipoch/medical-research-skills

A skill your agent uses to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally generate group-wise ESTIMATE…

aipoch/medical-research-skills

ETE (Environment for Tree Exploration) toolkit for phylogenetic and hierarchical tree analysis; use it when you need to parse/manipulate Newick/NHX trees, detect duplication/speciation events…

aipoch/medical-research-skills

Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible reports.

aipoch/medical-research-skills

Generates a full expert interview article including introduction, Q&A body, and summary based on interview questions and expert background.

aipoch/medical-research-skills

A skill your agent uses when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk…

aipoch/medical-research-skills

Generates FAQ lists from complex medical policies or protocols.

aipoch/medical-research-skills

Generate standardized figure legends for scientific figures and charts; use when preparing publication-ready legends that summarize design, variables, sample size, and key statistical notes.

aipoch/medical-research-skills

Writes complete, publication-grade figure legends that can stand on their own.

aipoch/medical-research-skills

Organize, back up, compress, split, and merge files/folders using rule-driven plans; use when you need safe previews, conflict handling, and verification before executing file operations.

aipoch/medical-research-skills

Perform fast file name and content searches with ripgrep (rg); use it when you need to locate files by glob/regex, find keywords across directories, or replace common find/grep workflows.

aipoch/medical-research-skills

Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype) for single or…

aipoch/medical-research-skills

A skill your agent uses when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory…

aipoch/medical-research-skills

Search for gene expression DataSets and Profiles in the NCBI GEO database.

aipoch/medical-research-skills

Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or…

aipoch/medical-research-skills

Simulate structured grant peer review for biomedical proposals; use when stress-testing significance, innovation, approach, feasibility, and reviewer-facing weaknesses before submission.

aipoch/medical-research-skills

Assist with biomedical grant proposal drafting, structure, and revision; use when preparing fundable proposal sections, aligning aims and methods, or improving reviewer-facing clarity.

aipoch/medical-research-skills

Writes Specific Aims pages for grant applications. An agent skill from aipoch/medical-research-skills.

aipoch/medical-research-skills

A skill your agent uses to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object.

aipoch/medical-research-skills

A skill your agent uses when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample…

aipoch/medical-research-skills

Extract text from images with Tesseract OCR; use it when you need to recognize text from PNG/JPEG/TIFF/BMP images, select a language model, or run OCR via natural-language requests (e.g., "Interpret…

aipoch/medical-research-skills

Batch-convert and compress local images with Pillow; use when you need an offline, scriptable pipeline for directory-based processing.

aipoch/medical-research-skills

Generate renderable, scientific-style SVG graphics directly from natural-language requirements (no image models).

aipoch/medical-research-skills

Assists researchers in generating INPLASY registration content for meta-analyses from a title and optional protocol.

aipoch/medical-research-skills

Access JASPAR database for transcription factor binding profiles (matrices), collections, and species via REST API.

aipoch/medical-research-skills

A skill your agent uses when creating journal cover images, generating scientific artwork prompts, or designing graphical abstracts.

aipoch/medical-research-skills

Access the KEGG database API to retrieve biological data (genes, pathways, compounds, drugs).

aipoch/medical-research-skills

Direct access to KEGG via the REST API for academic-only pathway/gene/compound/drug queries; use when you need precise HTTP-level control or targeted KEGG ID mapping.

aipoch/medical-research-skills

A skill your agent uses when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group.

aipoch/medical-research-skills

A skill your agent uses when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted…

aipoch/medical-research-skills

Generate professional Key Visual (KV) design proposals and images; use when you have a slogan/copy and a marketing scenario but need a clear visual direction and a ready-to-generate image prompt.

aipoch/medical-research-skills

A skill your agent uses when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path…

aipoch/medical-research-skills

A skill your agent uses when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.

aipoch/medical-research-skills

Acknowledges limitations in sample, design, measurement, and validation in a professional way that improves credibility without undermining the whole paper.

aipoch/medical-research-skills

A skill your agent uses when optimizing LinkedIn profiles for doctors, physicians, nurses, healthcare professionals, or medical researchers.

aipoch/medical-research-skills

Generate statistics for publication-year and journal distributions from local references or PDFs; use when you need standardized Year/Journal tables and a summary without any network access.

aipoch/medical-research-skills

Use this bioinformatics data analysis skill to construct a database-driven lncRNA-mRNA regulatory network from target lncRNA and/or gene lists by projecting shared miRNA evidence from local ceRNA…

aipoch/medical-research-skills

Process, clean, and compare mass spectrometry (MS/MS) spectra with Matchms; use when you need reproducible spectral filtering and similarity scoring for metabolomics workflows.

aipoch/medical-research-skills

A low-level plotting library for comprehensive customization.

aipoch/medical-research-skills

Medicinal chemistry screening filters for compound prioritization; use when you need to apply drug-likeness rules, PAINS/structural alerts, and complexity metrics to triage or optimize libraries.

aipoch/medical-research-skills