GitHub organization
Agent skills by aipoch
- skills
- 575
- repositories
- 2
Repositories by aipoch
- medical-research-skillsHundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.2k stars · 567 skills
- open-scienceThe open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python/R execution and traceable artifacts for reproducible research on macOS, Windows and Linux.5.4k stars · 8 skills
Skills by aipoch, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Creates, revises, evaluates and publishes skills in the Open-Science app through its native host.skills composer, with optional test prompts and benchmarks. | aipoch/ | 5.4k | — | ~1.7k | Automated safety check: Pass | Apache-2.0 | today |
| 2 | Prepares setup instructions and a named activation file for a user-managed software environment on an Open-Science SSH or Slurm compute host. | aipoch/ | 5.4k | — | ~2.6k | Automated safety check: Pass | Apache-2.0 | today |
| 3 | Handles /Customize requests by sending Skill work to the internal skill-creator and managing Specialist agents through the JavaScript host.agents SDK. | aipoch/ | 5.4k | — | ~2.7k | Automated safety check: Pass | Apache-2.0 | today |
| 4 | Publication-grade correctness and legibility rules for final-deliverable scientific figures, not exploratory plots. | aipoch/ | 5.4k | — | ~5.1k | Automated safety check: Pass | Apache-2.0 | today |
| 5 | Judge and reshape the story told by an entire paper figure deck. | aipoch/ | 5.4k | — | ~4.4k | Automated safety check: Pass | Apache-2.0 | today |
| 6 | Teaches an agent to inspect Open-Science's JavaScript control REPL, check which host.* calls are allowed, and find project files, sessions and agent frames. | aipoch/ | 5.4k | — | ~3.8k | Automated safety check: Pass | Apache-2.0 | today |
| 7 | Complete workflow for generating academic research posters from PDF literature; use when you need to extract paper content from PDFs and produce a LaTeX-based poster… | aipoch/ | 2k | — | ~2.2k | Automated safety check: Pass | MIT | 20 days ago |
| 8 | Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. | aipoch/ | 2k | — | ~1.4k | Automated safety check: Pass | MIT | 20 days ago |
| 9 | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. | aipoch/ | 2k | — | ~3.7k | Automated safety check: Pass | MIT | 20 days ago |
| 10 | Compose one publication-grade multi-panel figure. An agent skill from aipoch/open-science. | aipoch/ | 5.4k | — | ~2.9k | Automated safety check: Pass | Apache-2.0 | today |
| 11 | A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. | aipoch/ | 2k | — | ~1.8k | Automated safety check: Pass | MIT | 20 days ago |
| 12 | Evaluate and use SSH Remote Compute before choosing where to run GPU, high-memory, parallel, batch, model-inference, bioinformatics, or other long-running scientific work; supports short remote… | aipoch/ | 5.4k | — | ~5.7k | Automated safety check: Pass | Apache-2.0 | today |
| 13 | Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for journal… | aipoch/ | 2k | — | ~1.7k | Automated safety check: Pass | MIT | 20 days ago |
| 14 | Creates academic-poster writing packages for LaTeX using beamerposter, tikzposter, or baposter. | aipoch/ | 2k | — | ~1.3k | Automated safety check: Pass | MIT | 20 days ago |
| 15 | End-to-end Neuropixels extracellular electrophysiology analysis (SpikeGLX/Open Ephys/NWB) including preprocessing, motion correction, Kilosort4 spike sorting, QC metrics, and Allen/IBL-style… | aipoch/ | 2k | — | ~2.4k | Automated safety check: Pass | MIT | 20 days ago |
| 16 | Expert system for generating comprehensive biomedical phenotype introductions with structured academic content. | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 17 | Multi-database literature search and search-strategy design that outputs structured, reproducible result lists; use when you need reference retrieval, systematic searching, review topic selection… | aipoch/ | 2k | — | ~2k | Automated safety check: Pass | MIT | 20 days ago |
| 18 | Generate clinical trial protocols for medical devices or drugs. | aipoch/ | 2k | 2 repos | ~5.2k | Automated safety check: Pass | MIT | 20 days ago |
| 19 | Generate medical referral letters with patient summary, reason for referral, key findings, and requested next steps; use when transferring care or communicating with another clinician or department. | aipoch/ | 2k | — | ~2.5k | Automated safety check: Pass | MIT | 20 days ago |
| 20 | Venue-specific LaTeX templates, formatting requirements, and submission guidelines for journals, conferences, posters, and grants—use when a target venue imposes strict layout, page limits… | aipoch/ | 2k | — | ~1.4k | Automated safety check: Pass | MIT | 20 days ago |
| 21 | Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. | aipoch/ | 2k | — | ~2.5k | Automated safety check: Pass | MIT | 20 days ago |
| 22 | Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. | aipoch/ | 2k | 1 repo | ~2.6k | Automated safety check: Pass | MIT | 20 days ago |
| 23 | Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger filtering for… | aipoch/ | 2k | 1 repo | ~2.9k | Automated safety check: Pass | MIT | 20 days ago |
| 24 | Generates submission-ready Elsevier/SCI Highlights from manuscript text or extracted PDF/DOCX/TXT content. | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 25 | Design and simulate adaptive clinical trials with interim analyses, decision rules, and operating-characteristic summaries; use when planning adaptive designs or comparing stopping, enrichment, or… | aipoch/ | 2k | — | ~3k | Automated safety check: Pass | MIT | 20 days ago |
| 26 | 26.Alphafold DB Access over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by UniProt accession. | aipoch/ | 2k | — | ~606 | Automated safety check: Pass | MIT | 20 days ago |
| 27 | 27.Arboreto Infer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory relationships. | aipoch/ | 2k | — | ~802 | Automated safety check: Pass | MIT | 20 days ago |
| 28 | Search and retrieve scientific preprints from arXiv; use it when you need to find papers by keyword/author/category, fetch metadata (abstract, DOI, PDF URL), or download PDFs for offline reading. | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 29 | A skill your agent uses when determining author order on research manuscripts, assigning CRediT contributor roles for transparency, documenting individual contributions to collaborative projects, or… | aipoch/ | 2k | — | ~2.9k | Automated safety check: Pass | MIT | 20 days ago |
| 30 | Generate structured SOAP notes from clinical narratives, transcripts, or existing notes; use when the user needs de-identified clinical documentation organized into Subjective, Objective… | aipoch/ | 2k | — | ~4.3k | Automated safety check: Pass | MIT | 20 days ago |
| 31 | A skill your agent uses when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after… | aipoch/ | 2k | — | ~2.8k | Automated safety check: Pass | MIT | 20 days ago |
| 32 | 32.Biodbnet API Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping. | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 33 | 33.Biogrid Orcs Accesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). | aipoch/ | 2k | — | ~1.7k | Automated safety check: Pass | MIT | 20 days ago |
| 34 | Builds professional search strategies for PubMed, Embase, Web of Science, and similar databases. | aipoch/ | 2k | — | ~1.9k | Automated safety check: Pass | MIT | 20 days ago |
| 35 | Search, retrieve metadata, and download PDFs for bioRxiv preprints; use when you need to discover biology preprints by keywords/authors/date ranges and programmatically fetch their details. | aipoch/ | 2k | — | ~1.4k | Automated safety check: Pass | MIT | 20 days ago |
| 36 | 36.Bioservices Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially… | aipoch/ | 2k | — | ~1.7k | Automated safety check: Pass | MIT | 20 days ago |
| 37 | Programmatic access to the BRENDA enzyme database via the SOAP API; use when you need kinetic constants (Km, kcat, Vmax), reaction equations, enzyme properties (pH/temperature optima, stability), or… | aipoch/ | 2k | — | ~1.6k | Automated safety check: Notes | MIT | 20 days ago |
| 38 | A skill your agent uses when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF… | aipoch/ | 2k | — | ~2.4k | Automated safety check: Pass | MIT | 20 days ago |
| 39 | Batch-unify typography (font family, size, italics) for Word table cells and embedded charts; use when you need consistent formatting across theses/reports without changing body text. | aipoch/ | 2k | — | ~3k | Automated safety check: Pass | MIT | 20 days ago |
| 40 | Query the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), chemical structure… | aipoch/ | 2k | — | ~1.3k | Automated safety check: Pass | MIT | 20 days ago |
| 41 | A skill your agent uses when estimating relative immune cell infiltration from a bulk expression matrix with a CIBERSORT-style nu-SVR deconvolution workflow based on an LM22 signature matrix… | aipoch/ | 2k | — | ~2.6k | Automated safety check: Pass | MIT | 20 days ago |
| 42 | Comprehensive citation management for academic research; use when you need to discover papers (Google Scholar/PubMed), extract/verify metadata (DOI/PMID/arXiv/URL), and produce validated, clean… | aipoch/ | 2k | — | ~2.3k | Automated safety check: Pass | MIT | 20 days ago |
| 43 | Build and visualize a citation network from a source/target CSV to identify key papers, communities, and emerging hotspots; use when you have citation pairs and need fast literature review or trend… | aipoch/ | 2k | — | ~1.9k | Automated safety check: Pass | MIT | 20 days ago |
| 44 | A skill your agent uses when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab… | aipoch/ | 2k | — | ~2.4k | Automated safety check: Pass | MIT | 20 days ago |
| 45 | Batch extracts and verifies structured information (PMID, title, abstract, methodology, results, etc.) from clinical research literature using PMIDs. | aipoch/ | 2k | — | ~1.2k | Automated safety check: Pass | MIT | 20 days ago |
| 46 | Query the ClinicalTrials.gov API v2 to search for clinical trials, retrieve detailed study protocols, and analyze recruitment status; use when you need to find trials by condition/drug, export… | aipoch/ | 2k | — | ~762 | Automated safety check: Pass | MIT | 20 days ago |
| 47 | Utilities for querying the NCBI ClinVar database to retrieve variant records, clinical significance, and phenotype relationships; use when searching variants by gene/condition/significance… | aipoch/ | 2k | — | ~856 | Automated safety check: Pass | MIT | 20 days ago |
| 48 | Adapt scientific abstracts to conference-specific word limits, section rules, and formatting constraints; use when reshaping an existing abstract for submission. | aipoch/ | 2k | — | ~2.2k | Automated safety check: Pass | MIT | 20 days ago |
Questions, answered from the data.
What is the best skill by aipoch?
Open-Science Skill Creator from aipoch/open-science ranks first of the 575 skills by aipoch listed here, with the highest score: its repository has 5.4k GitHub stars, its SKILL.md loads about 1.7k tokens and it passes the automated safety check with no findings. Next come Compute Environment Setup and Customize Specialists and Skills.
Are aipoch's skills official?
None yet. All 575 skills by aipoch listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.