GitHub organization
Agent skills by aipoch, page 2
Skills by aipoch, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 49 | Generates academic conference tweets and summaries by filtering abstracts, translating content, and creating engaging titles. | aipoch/ | 2k | — | ~1.6k | Automated safety check: Pass | MIT | 20 days ago |
| 50 | A skill your agent uses when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization. | aipoch/ | 2k | — | ~2k | Automated safety check: Pass | MIT | 20 days ago |
| 51 | 51.Ctd API Accesses Comparative Toxicogenomics Database (CTD) for chemical, gene, disease, and pathway interaction data. | aipoch/ | 2k | — | ~1.7k | Automated safety check: Pass | MIT | 20 days ago |
| 52 | A skill your agent uses when evaluating the clinical utility of a binary prediction model from a single clinical CSV file by fitting a logistic decision-curve model, plotting decision and… | aipoch/ | 2k | — | ~2.8k | Automated safety check: Pass | MIT | 20 days ago |
| 53 | A skill your agent uses when building a decision tree model in R and generating feature importance ranking outputs. | aipoch/ | 2k | — | ~2.1k | Automated safety check: Pass | MIT | 20 days ago |
| 54 | A skill your agent uses when screening differentially expressed genes from a bulk expression matrix between two user-specified groups, producing DEG tables, a volcano plot, and a clustered heatmap. | aipoch/ | 2k | — | ~2.1k | Automated safety check: Pass | MIT | 20 days ago |
| 55 | Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 56 | Diffusion-based molecular docking to predict 3D ligand–protein binding poses (blind docking) with confidence scoring; use when you need pose prediction for drug discovery or virtual screening. | aipoch/ | 2k | — | ~776 | Automated safety check: Pass | MIT | 20 days ago |
| 57 | A skill your agent uses when analyzing bulk RNA-seq or microarray expression data to identify differentially expressed genes between two biological groups (case vs control), with volcano plots and… | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 58 | A skill your agent uses when drafting patient discharge summaries, creating personalized discharge instructions, simulating post-discharge outcomes, reducing hospital readmissions, or optimizing… | aipoch/ | 2k | — | ~3.1k | Automated safety check: Pass | MIT | 20 days ago |
| 59 | Generate hospital discharge summaries from admission data, hospital course, diagnoses, procedures, and follow-up plans; use when a structured discharge document is required from clinical notes. | aipoch/ | 2k | — | ~2.7k | Automated safety check: Pass | MIT | 20 days ago |
| 60 | Composes a Discussion around key findings, mechanisms, clinical relevance, and limitations. | aipoch/ | 2k | — | ~1.9k | Automated safety check: Pass | MIT | 20 days ago |
| 61 | Structures and writes discussion sections for academic papers and research reports. | aipoch/ | 2k | — | ~2.5k | Automated safety check: Pass | MIT | 20 days ago |
| 62 | Programmatic access to DrugBank drug and target data; use when you need to download, parse, and analyze DrugBank XML for properties, interactions, pathways, and pharmacology. | aipoch/ | 2k | — | ~1.6k | Automated safety check: Pass | MIT | 20 days ago |
| 63 | A skill your agent uses when selecting predictive genes or other molecular features from bulk expression matrices for binary case-vs-control classification with elastic net logistic regression… | aipoch/ | 2k | — | ~2.9k | Automated safety check: Pass | MIT | 20 days ago |
| 64 | Access Ensembl REST API for vertebrate genomic data; use when you need gene/ID lookups, sequence retrieval, variant effect prediction (VEP), or homology/assembly coordinate mapping. | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 65 | A skill your agent uses to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally generate group-wise ESTIMATE… | aipoch/ | 2k | — | ~3.1k | Automated safety check: Pass | MIT | 20 days ago |
| 66 | 66.Etetoolkit ETE (Environment for Tree Exploration) toolkit for phylogenetic and hierarchical tree analysis; use it when you need to parse/manipulate Newick/NHX trees, detect duplication/speciation events… | aipoch/ | 2k | — | ~1.4k | Automated safety check: Pass | MIT | 20 days ago |
| 67 | Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible reports. | aipoch/ | 2k | — | ~1.1k | Automated safety check: Pass | MIT | 20 days ago |
| 68 | Generates a full expert interview article including introduction, Q&A body, and summary based on interview questions and expert background. | aipoch/ | 2k | — | ~1.7k | Automated safety check: Pass | MIT | 20 days ago |
| 69 | A skill your agent uses when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk… | aipoch/ | 2k | — | ~3.2k | Automated safety check: Pass | MIT | 20 days ago |
| 70 | Generates FAQ lists from complex medical policies or protocols. | aipoch/ | 2k | — | ~1.9k | Automated safety check: Pass | MIT | 20 days ago |
| 71 | Generate standardized figure legends for scientific figures and charts; use when preparing publication-ready legends that summarize design, variables, sample size, and key statistical notes. | aipoch/ | 2k | — | ~2.4k | Automated safety check: Pass | MIT | 20 days ago |
| 72 | Writes complete, publication-grade figure legends that can stand on their own. | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 73 | Organize, back up, compress, split, and merge files/folders using rule-driven plans; use when you need safe previews, conflict handling, and verification before executing file operations. | aipoch/ | 2k | — | ~1.6k | Automated safety check: Pass | MIT | 20 days ago |
| 74 | 74.File Search Perform fast file name and content searches with ripgrep (rg); use it when you need to locate files by glob/regex, find keywords across directories, or replace common find/grep workflows. | aipoch/ | 2k | — | ~1.4k | Automated safety check: Pass | MIT | 20 days ago |
| 75 | Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype) for single or… | aipoch/ | 2k | — | ~1.3k | Automated safety check: Pass | MIT | 20 days ago |
| 76 | A skill your agent uses when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory… | aipoch/ | 2k | — | ~1.5k | Automated safety check: Pass | MIT | 20 days ago |
| 77 | Search for gene expression DataSets and Profiles in the NCBI GEO database. | aipoch/ | 2k | — | ~1.7k | Automated safety check: Pass | MIT | 20 days ago |
| 78 | 78.Gget Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or… | aipoch/ | 2k | — | ~816 | Automated safety check: Pass | MIT | 20 days ago |
| 79 | Simulate structured grant peer review for biomedical proposals; use when stress-testing significance, innovation, approach, feasibility, and reviewer-facing weaknesses before submission. | aipoch/ | 2k | — | ~3.5k | Automated safety check: Pass | MIT | 20 days ago |
| 80 | Assist with biomedical grant proposal drafting, structure, and revision; use when preparing fundable proposal sections, aligning aims and methods, or improving reviewer-facing clarity. | aipoch/ | 2k | — | ~2.6k | Automated safety check: Pass | MIT | 20 days ago |
| 81 | Writes Specific Aims pages for grant applications. An agent skill from aipoch/medical-research-skills. | aipoch/ | 2k | — | ~1.8k | Automated safety check: Pass | MIT | 20 days ago |
| 82 | A skill your agent uses to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. | aipoch/ | 2k | — | ~3.9k | Automated safety check: Pass | MIT | 20 days ago |
| 83 | A skill your agent uses when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample… | aipoch/ | 2k | — | ~3.1k | Automated safety check: Pass | MIT | 20 days ago |
| 84 | 84.Image OCR Extract text from images with Tesseract OCR; use it when you need to recognize text from PNG/JPEG/TIFF/BMP images, select a language model, or run OCR via natural-language requests (e.g., "Interpret… | aipoch/ | 2k | — | ~1.7k | Automated safety check: Pass | MIT | 20 days ago |
| 85 | Batch-convert and compress local images with Pillow; use when you need an offline, scriptable pipeline for directory-based processing. | aipoch/ | 2k | — | ~1.4k | Automated safety check: Pass | MIT | 20 days ago |
| 86 | Generate renderable, scientific-style SVG graphics directly from natural-language requirements (no image models). | aipoch/ | 2k | — | ~1.1k | Automated safety check: Pass | MIT | 20 days ago |
| 87 | Assists researchers in generating INPLASY registration content for meta-analyses from a title and optional protocol. | aipoch/ | 2k | — | ~1.1k | Automated safety check: Pass | MIT | 20 days ago |
| 88 | 88.Jaspar API Access JASPAR database for transcription factor binding profiles (matrices), collections, and species via REST API. | aipoch/ | 2k | — | ~1.1k | Automated safety check: Pass | MIT | 20 days ago |
| 89 | A skill your agent uses when creating journal cover images, generating scientific artwork prompts, or designing graphical abstracts. | aipoch/ | 2k | — | ~1.8k | Automated safety check: Pass | MIT | 20 days ago |
| 90 | 90.Kegg API Access the KEGG database API to retrieve biological data (genes, pathways, compounds, drugs). | aipoch/ | 2k | — | ~1.6k | Automated safety check: Pass | MIT | 20 days ago |
| 91 | Direct access to KEGG via the REST API for academic-only pathway/gene/compound/drug queries; use when you need precise HTTP-level control or targeted KEGG ID mapping. | aipoch/ | 2k | — | ~1.3k | Automated safety check: Pass | MIT | 20 days ago |
| 92 | A skill your agent uses when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group. | aipoch/ | 2k | — | ~2.5k | Automated safety check: Pass | MIT | 20 days ago |
| 93 | A skill your agent uses when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted… | aipoch/ | 2k | — | ~2.5k | Automated safety check: Pass | MIT | 20 days ago |
| 94 | 94.Kv Design Generate professional Key Visual (KV) design proposals and images; use when you have a slogan/copy and a marketing scenario but need a clear visual direction and a ready-to-generate image prompt. | aipoch/ | 2k | — | ~974 | Automated safety check: Pass | MIT | 20 days ago |
| 95 | A skill your agent uses when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path… | aipoch/ | 2k | — | ~2.3k | Automated safety check: Pass | MIT | 20 days ago |
| 96 | A skill your agent uses when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots. | aipoch/ | 2k | — | ~3.6k | Automated safety check: Pass | MIT | 20 days ago |
