Agent skill

Iso Certification

by aipoch in aipoch/medical-research-skills

A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS.

MITAuto-check passedLegal & Compliance

Install Iso Certification

skills CLI
$ npx skills add aipoch/medical-research-skills --skill iso-certification -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install aipoch/medical-research-skills iso-certification --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/aipoch/medical-research-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/scientific-skills/Other/iso-13485-certification .claude/skills/iso-certification && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
iso-certification
GitHub stars
2k
Token cost
~1.8k tokens
SKILL.md length
678 words
Files
10 (incl. scripts, references, assets)
Skills in repo
567
Repo updated
First seen
Licence
MIT

At a glance

A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS.

  • Works in 8 steps: Run an automated gap analysis (end-to-end) → Use the references and templates to… → Gap analysis logic (practical model) → …
  • You need to perform a documentation gap analysis
  • SKILL.md covers When to Use, Key Features, Dependencies and Example Usage, plus 1 more section
  • Runs Python scripts from its folder; calls python

What it does

Iso Certification is an agent skill from aipoch/medical-research-skills. A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. Use when you need to perform a documentation gap analysis, draft or update a Quality Manual, create required procedures/work instructions, build Medical Device Files (MDF), interpret ISO 13485 clauses, or identify missing documents for certification (often triggered by ISO 13485, QMS certification, FDA QMSR, EU MDR, or quality system documentation requests).

Its SKILL.md is about 1.8k tokens, which your agent loads only when the skill is triggered. The skill folder holds 14 other files, including scripts, reference files and assets (for example `assets/templates/procedures/CAPA-procedure-template.md`, `assets/templates/procedures/document-control-procedure-template.md` and `assets/templates/quality-manual-template.md`).

It sits in Legal & Compliance. The repository describes itself as: Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing. The licence is MIT.

When your agent uses it

  • You need to perform a documentation gap analysis
  • Update a Quality Manual
  • Create required procedures/work instructions
  • Build Medical Device Files (MDF)

Example prompts

  • “/iso-certification”

Requirements

  • Python 3

Workflow steps

8 steps, taken from the step headings in SKILL.md.

  1. Run an automated gap analysis (end-to-end)
  2. Use the references and templates to draft core documents
  3. Gap analysis logic (practical model)
  4. ISO 13485 documentation structure (recommended hierarchy)
  5. Quality Manual requirements (key checkpoints)
  6. Medical Device File (MDF) content model (Clause 4.2.3)
  7. Procedure customization parameters (what must be decided)
  8. Mandatory procedures list (reference-driven)

What it can do on your machine

Read from SKILL.md and the folder at commit 686e09d. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships 1 file in scripts/ (Python), which the agent can run.

    Shell commands in SKILL.md call:

    • python

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Iso Certification loads about 1.8k tokens when it runs, and up to ~28k if it reads all its reference files. Until then it costs about 117 tokens; SKILL.md has 678 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~117
When it runs · the whole SKILL.md, loaded when a task matches
~1.8k
With references · SKILL.md plus every file in references/, read only if the agent opens them
~28k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.

SKILL.md

The full file from aipoch/medical-research-skills at commit 686e09d, republished under its MIT licence (© aipoch). 678 words, ~1,783 tokens.

Download SKILL.mdSave it as .claude/skills/iso-certification/SKILL.md (or your agent's skills folder). This skill also uses 9 other files; get the full folder from GitHub.
name
iso-certification
description
A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. Use when you need to perform a documentation gap analysis, draft or update a Quality Manual, create required procedures/work instructions, build Medical Device Files (MDF), interpret ISO 13485 clauses, or identify missing documents for certification (often triggered by ISO 13485, QMS certification, FDA QMSR, EU MDR, or quality system documentation requests).
license
MIT
author
AIPOCH

Source: https://github.com/aipoch/medical-research-skills

When to Use

Use this skill in any of the following situations:

  1. Starting ISO 13485 implementation and you need a structured documentation set (Quality Manual, procedures, records, templates).
  2. Assessing an existing QMS and you want a gap analysis against ISO 13485:2016 requirements and mandatory documentation.
  3. Preparing for a certification audit and you need readiness checks, evidence mapping, and prioritized remediation actions.
  4. Creating or updating specific SOPs (e.g., CAPA, complaint handling, internal audit, document/record control) using consistent templates.
  5. Transitioning or harmonizing with regulations (e.g., FDA QMSR alignment, EU MDR documentation expectations) and you need to reorganize device documentation (e.g., MDF).

Key Features

  • Automated documentation gap analysis via scripts/gap_analyzer.py to detect missing/covered QMS documents.
  • Clause-by-clause ISO 13485 reference guidance using references/iso-13485-requirements.md.
  • Mandatory documentation mapping (procedures and required documents) using references/mandatory-documents.md.
  • Comprehensive audit-style checklist for detailed assessments using references/gap-analysis-checklist.md.
  • Template-based document generation for Quality Manual and key procedures under assets/templates/.
  • Medical Device File (MDF) guidance aligned to ISO 13485 Clause 4.2.3 and FDA QMSR harmonization concepts.

Dependencies

  • Python: 3.10+ (recommended)
  • pip: 23+ (recommended)

Note: This repository references a script (scripts/gap_analyzer.py). If it introduces additional third-party packages, install them per the repository’s requirements.txt (if present). If no requirements.txt exists, the script is expected to run on the Python standard library.

Example Usage

1) Run an automated gap analysis (end-to-end)
bash
# 1) (Optional) Create and activate a virtual environment
python -m venv .venv
source .venv/bin/activate  # macOS/Linux
# .venv\Scripts\activate   # Windows PowerShell

# 2) Run the gap analyzer against your existing QMS document folder
python scripts/gap_analyzer.py \
  --docs-dir ./my-qms-docs \
  --output ./gap-report.json

# 3) Review the output
cat ./gap-report.json
2) Use the references and templates to draft core documents

A typical workflow after generating gap-report.json:

  1. Read ISO clause guidance:
    • references/iso-13485-requirements.md
  2. Confirm mandatory documents and applicability:
    • references/mandatory-documents.md
  3. Draft/update the Quality Manual:
    • assets/templates/quality-manual-template.md
    • Guidance: references/quality-manual-guide.md
  4. Draft priority procedures (examples):
    • assets/templates/procedures/document-control-procedure-template.md
    • assets/templates/procedures/CAPA-procedure-template.md
  5. Perform a detailed checklist-based assessment:
    • references/gap-analysis-checklist.md

Implementation Details

1) Gap analysis logic (practical model)

The gap analysis workflow is designed to answer:

  • Existence: Do required documents/procedures appear to exist in the provided document set?
  • Coverage: Which ISO 13485 clauses and mandatory procedures are addressed?
  • Prioritization: What should be created/updated first to reduce audit risk?

Typical inputs

  • A directory containing QMS documentation (e.g., .md, .txt, .docx, .pdf), including manuals, SOPs, work instructions, and forms.

Typical outputs

  • A machine-readable report (e.g., gap-report.json) that can be summarized into:
    • Present vs. missing procedures/documents
    • Clause coverage estimates
    • A prioritized action list (Critical/High/Medium/Low)
  • Level 1: Quality Manual (policy-level mapping to Clauses 4–8)
  • Level 2: Procedures / SOPs (who/what/when; stable process requirements)
  • Level 3: Work Instructions (how-to steps; task-level detail)
  • Level 4: Forms / Records (evidence of implementation)

This skill emphasizes writing procedures that define what must be done and who is responsible, while keeping detailed step-by-step instructions in work instructions.

Show full SKILL.md (252 more words)Show less
3) Quality Manual requirements (key checkpoints)

When drafting with assets/templates/quality-manual-template.md and references/quality-manual-guide.md, ensure:

  • The manual includes required content aligned to ISO 13485 Clause 4.2.2.
  • The scope is explicit and any exclusions are justified (only where permitted and not impacting safety/effectiveness).
  • The manual references the supporting procedures and describes process interactions (e.g., a process map).
  • Approval/signature expectations are met (top management ownership of policy-level commitments).
4) Medical Device File (MDF) content model (Clause 4.2.3)

For each device type/family, the MDF should consolidate or reference:

  1. Device description and intended use
  2. Labeling and IFU specifications
  3. Product and manufacturing specifications
  4. Purchasing/manufacturing/servicing procedures (as applicable)
  5. Monitoring and measurement procedures
  6. Installation requirements (if applicable)
  7. Risk management documentation
  8. Verification and validation evidence
  9. Design and development documentation (if applicable)

This structure supports ISO 13485 expectations and aligns with FDA QMSR’s direction toward consolidated device documentation.

5) Procedure customization parameters (what must be decided)

When generating SOPs from templates (e.g., CAPA, document control), the organization must define:

  • Roles and responsibilities (role-based, not person-based)
  • Triggers and inputs (complaints, audit findings, nonconformities, feedback)
  • Timeframes (triage, investigation, closure, effectiveness checks)
  • Decision criteria (severity, risk, escalation thresholds)
  • Records and retention (what evidence is kept and for how long)
  • Interfaces (how CAPA links to complaints, audits, risk management, change control)
6) Mandatory procedures list (reference-driven)

Use references/mandatory-documents.md as the source of truth for:

  • Which procedures are required vs. conditional (“if applicable”)
  • How to justify non-applicability
  • What evidence/records each procedure should produce

For detailed clause interpretation, use references/iso-13485-requirements.md.

© aipoch, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

SKILL.md and 9 other files (scripts, references, assets) in scientific-skills/Other/iso-13485-certification of aipoch/medical-research-skills.

  • SKILL.md
  • assets/templates/procedures/CAPA-procedure-template.md
  • assets/templates/procedures/document-control-procedure-template.md
  • assets/templates/quality-manual-template.md
  • iso-13485-certification_audit_result_v1.json
  • references/gap-analysis-checklist.md
  • references/iso-13485-requirements.md
  • references/mandatory-documents.md
  • references/quality-manual-guide.md
  • scripts/gap_analyzer.py

Open the folder on GitHubat commit 686e09d

Compare with similar skills

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Treatment Plansynulihao/AgentSkillOS61713 repos~13kAutomated safety check: NotesNone
Scholar Ethicsjoshzyj/open-scholar-skill168—~9.6kAutomated safety check: PassCustom licence
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Questions about Iso Certification

What does Iso Certification do?

A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. Iso Certification is an agent skill from aipoch/medical-research-skills. A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS.

When should I use Iso Certification?

Iso Certification fits situations like: you need to perform a documentation gap analysis; update a Quality Manual; create required procedures/work instructions; build Medical Device Files (MDF).

How do I install Iso Certification in Claude Code?

Run `npx skills add aipoch/medical-research-skills --skill iso-certification -a claude-code`. Or copy the skill folder (scientific-skills/Other/iso-13485-certification in aipoch/medical-research-skills) into .claude/skills/iso-certification in your project. Claude Code loads it when a task matches its description.

How do I install Iso Certification in Codex?

Run `npx skills add aipoch/medical-research-skills --skill iso-certification -a codex`. Or copy the skill folder (scientific-skills/Other/iso-13485-certification in aipoch/medical-research-skills) into .agents/skills/iso-certification in your project. Codex loads it when a task matches its description.

Can I use Iso Certification in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add aipoch/medical-research-skills --skill iso-certification -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/iso-certification, .gemini/skills/iso-certification, .github/skills/iso-certification and .opencode/skills/iso-certification in your project.

What does Iso Certification need to run?

Going by SKILL.md and its folder, Iso Certification needs Python for the scripts in its folder and the command-line tools its instructions call (python). Our summary lists: Python 3.

Does Iso Certification access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Iso Certification safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.

What licence does Iso Certification use?

Iso Certification is published under the MIT licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Iso Certification use?

About 1.8k tokens (SKILL.md is roughly 7.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 26k tokens, read only when the agent opens those files.

What are the alternatives to Iso Certification?

Skills that share tags, products or a category with Iso Certification: Paper to Chinese Patent Drafter (Yuan1z0825/nature-skills, 46k stars), USPTO Patent and Trademark Data (davila7/claude-code-templates, 32k stars), Treatment Plans (ynulihao/AgentSkillOS, 617 stars) and Scholar Ethics (joshzyj/open-scholar-skill, 168 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Iso Certification?

aipoch (a GitHub organization) maintains it in aipoch/medical-research-skills, which has 1,974 GitHub stars. The repository holds 567 skills in this directory. The repository was last updated on September 17, 2026.

Source: aipoch/medical-research-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.