Deep Research Workflow
TokenRhythm/opensquilla
Runs multi-round research in three stages with a persisted state file, evidence tracking and a long-form report with per-claim citations.
Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-literature-deep-research --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/literature/tooluniverse-literature-deep-research .claude/skills/tooluniverse-literature-deep-research && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "tooluniverse-literature-deep-research" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/tooluniverse-literature-deep-research into .claude/skills/tooluniverse-literature-deep-research/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-literature-deep-research", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/wu-yc/LabClaw/tree/main/skills/literature/tooluniverse-literature-deep-researchType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-literature-deep-research --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/literature/tooluniverse-literature-deep-research .agents/skills/tooluniverse-literature-deep-research && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "tooluniverse-literature-deep-research" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/tooluniverse-literature-deep-research into .agents/skills/tooluniverse-literature-deep-research/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-literature-deep-research", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-literature-deep-research --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/literature/tooluniverse-literature-deep-research .cursor/skills/tooluniverse-literature-deep-research && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "tooluniverse-literature-deep-research" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/tooluniverse-literature-deep-research into .cursor/skills/tooluniverse-literature-deep-research/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-literature-deep-research", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/wu-yc/LabClaw.git --path skills/literature/tooluniverse-literature-deep-research--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-literature-deep-research --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/literature/tooluniverse-literature-deep-research .gemini/skills/tooluniverse-literature-deep-research && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "tooluniverse-literature-deep-research" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/tooluniverse-literature-deep-research into .gemini/skills/tooluniverse-literature-deep-research/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-literature-deep-research", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install wu-yc/LabClaw tooluniverse-literature-deep-researchInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/literature/tooluniverse-literature-deep-research .github/skills/tooluniverse-literature-deep-research && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "tooluniverse-literature-deep-research" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/tooluniverse-literature-deep-research into .github/skills/tooluniverse-literature-deep-research/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-literature-deep-research", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install wu-yc/LabClaw tooluniverse-literature-deep-research --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/literature/tooluniverse-literature-deep-research .opencode/skills/tooluniverse-literature-deep-research && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "tooluniverse-literature-deep-research" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/tooluniverse-literature-deep-research into .opencode/skills/tooluniverse-literature-deep-research/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse-literature-deep-research", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
tooluniverse-literature-deep-researchConduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction.
Tooluniverse Literature Deep Research is an agent skill from wu-yc/LabClaw. Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction. Creates a detailed report with mandatory completeness checklist, biological model synthesis, and testable hypotheses. For biological targets, resolves official IDs (Ensembl/UniProt), synonyms, naming collisions, and gathers expression/pathway context before literature search. Default deliverable is a report file; for single factoid questions, uses a fast verification mode and may include an…
Its SKILL.md is about 8.2k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Literature review and Deep research. It works with Ensembl and UniProt. The repository describes itself as: LabClaw – Operating Layer for LabOS (Stanford-Princeton AI Co-Scientists).
4 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit df37802. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md (its code samples are markdown, python and json).
From the folder's file list and the shell code blocks in SKILL.md.
Hosts in commands or code, which the agent is likely to contact:
doi.orgFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Tooluniverse Literature Deep Research loads about 8.2k tokens when it runs. Until then it costs about 171 tokens; SKILL.md has 1,854 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Without a licence we can't republish the file, so here is its outline and opening line. It has 1,854 words (~8,199 tokens).
“A systematic approach to comprehensive literature research that starts with target disambiguation to prevent missing details, uses evidence grading to separate signal from noise, and produces a content-focused report with mandatory completeness sections.”
Just SKILL.md in skills/literature/tooluniverse-literature-deep-research of wu-yc/LabClaw.
Open the folder on GitHubat commit df37802
We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 2 other GitHub owners. This page covers the copy in wu-yc/LabClaw, which our catalogue first saw on October 7, 2026.
Tooluniverse Literature Deep Research next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Tooluniverse Literature Deep Research this skillwu-yc/LabClaw | 1.1k | 2 repos | ~8.2k | Automated safety check: Pass | None | |
| Deep Research WorkflowTokenRhythm/opensquilla | 7.1k | — | ~1.3k | Automated safety check: Pass | Apache-2.0 | |
| Deep Researchsanjay3290/ai-skills | 432 | 9 repos | ~683 | Automated safety check: Notes | Apache-2.0 | |
| Academic Research PipelineImbad0202/academic-research-skills | 51k | — | ~15k | Automated safety check: Pass | Custom licence | |
| Academic Research Suite for CodexImbad0202/academic-research-skills-codex | 12k | — | ~12k | Automated safety check: Pass | Custom licence | |
| Deep Research Agent TeamImbad0202/academic-research-skills | 51k | — | ~13k | Automated safety check: Pass | Custom licence |
TokenRhythm/opensquilla
Runs multi-round research in three stages with a persisted state file, evidence tracking and a long-form report with per-claim citations.
sanjay3290/ai-skills
Execute autonomous multi-step research using Google Gemini Deep Research Agent.
Imbad0202/academic-research-skills
Orchestrates a ten-stage academic workflow from research to finished manuscript, including integrity checks, two rounds of peer review and revision.
Imbad0202/academic-research-skills-codex
A router skill that sends academic work such as literature reviews, drafting, citation checks, peer review and revision to the right workflow in the ARS suite.
Imbad0202/academic-research-skills
Runs a 13-agent pipeline for rigorous academic research, from forming the question through systematic search, synthesis, bias checks and an APA 7.0 report.
delorenj/mcp-server-trello
Decision-grade research, three ways: draft a deep-research prompt for the user to run in their own tool (ChatGPT, Gemini, Grok, Perplexity, …), process a finished research report — file it, distill…
wu-yc/LabClaw
Retrieves chemical compound information from PubChem and ChEMBL with disambiguation, cross-referencing, and quality assessment.
wu-yc/LabClaw
Search and retrieve clinical practice guidelines across 12+ authoritative sources including NICE, WHO, ADA, AHA/ACC, NCCN, SIGN, CPIC, CMA, CTFPHC, GIN, MAGICapp, PubMed, EuropePMC, TRIP, and…
wu-yc/LabClaw
Generate comprehensive disease research reports using 100+ ToolUniverse tools.
wu-yc/LabClaw
Identify drug repurposing candidates using ToolUniverse for target-based, compound-based, and disease-driven strategies.
wu-yc/LabClaw
Retrieves gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation, experiment quality assessment, and structured reports.
wu-yc/LabClaw
Perform comprehensive gene enrichment and pathway analysis using gseapy (ORA and GSEA), PANTHER, STRING, Reactome, and 40+ ToolUniverse tools.
Categories
Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction. Tooluniverse Literature Deep Research is an agent skill from wu-yc/LabClaw. Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction.
Tooluniverse Literature Deep Research fits situations like: users need thorough literature reviews; target profiles; verify specific claims from the literature.
Run `npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a claude-code`. Or copy the skill folder (skills/literature/tooluniverse-literature-deep-research in wu-yc/LabClaw) into .claude/skills/tooluniverse-literature-deep-research in your project. Claude Code loads it when a task matches its description.
Run `npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a codex`. Or copy the skill folder (skills/literature/tooluniverse-literature-deep-research in wu-yc/LabClaw) into .agents/skills/tooluniverse-literature-deep-research in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/tooluniverse-literature-deep-research, .gemini/skills/tooluniverse-literature-deep-research, .github/skills/tooluniverse-literature-deep-research and .opencode/skills/tooluniverse-literature-deep-research in your project.
SKILL.md names no scripts, command-line tools or credentials: Tooluniverse Literature Deep Research is instructions for the agent only.
SKILL.md names 1 domain. In commands or code: doi.org; the agent is likely to contact it when it follows the instructions. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
No licence was found for Tooluniverse Literature Deep Research or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
About 8.2k tokens (SKILL.md is roughly 33k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Tooluniverse Literature Deep Research: Deep Research Workflow (TokenRhythm/opensquilla, 7.1k stars), Deep Research (sanjay3290/ai-skills, 432 stars), Academic Research Pipeline (Imbad0202/academic-research-skills, 51k stars) and Academic Research Suite for Codex (Imbad0202/academic-research-skills-codex, 12k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
wu-yc (a GitHub user) maintains it in wu-yc/LabClaw, which has 1,055 GitHub stars. The repository holds 68 skills in this directory. The repository was last updated on March 19, 2026.
Source: wu-yc/LabClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.