Agent skill

Tooluniverse Literature Deep Research

by wu-yc in wu-yc/LabClaw

Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction.

No licenceAuto-check passedResearch & Science

Install Tooluniverse Literature Deep Research

skills CLI
$ npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install wu-yc/LabClaw tooluniverse-literature-deep-research --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/literature/tooluniverse-literature-deep-research .claude/skills/tooluniverse-literature-deep-research && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
tooluniverse-literature-deep-research
GitHub stars
1.1k
Used in
2 other repos
Token cost
~8.2k tokens
SKILL.md length
1,854 words
Files
1
Skills in repo
68
Repo updated
First seen
Licence
None found

At a glance

Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction.

  • Works in 4 steps: Initial Clarification → Target Disambiguation + Profile (Default… → Literature Search (Internal Methodology) → …
  • Users need thorough literature reviews
  • SKILL.md covers Workflow Overview, Phase 0: Initial Clarification, Phase 1: Target Disambiguation… and Phase 2: Literature Search…, plus 4 more sections
  • Reaches doi.org

What it does

Tooluniverse Literature Deep Research is an agent skill from wu-yc/LabClaw. Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction. Creates a detailed report with mandatory completeness checklist, biological model synthesis, and testable hypotheses. For biological targets, resolves official IDs (Ensembl/UniProt), synonyms, naming collisions, and gathers expression/pathway context before literature search. Default deliverable is a report file; for single factoid questions, uses a fast verification mode and may include an…

Its SKILL.md is about 8.2k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Research & Science, covering Literature review and Deep research. It works with Ensembl and UniProt. The repository describes itself as: LabClaw – Operating Layer for LabOS (Stanford-Princeton AI Co-Scientists).

When your agent uses it

  • Users need thorough literature reviews
  • Target profiles
  • Verify specific claims from the literature

Example prompts

  • “/tooluniverse-literature-deep-research”

Workflow steps

4 steps, taken from the step headings in SKILL.md.

  1. Initial Clarification
  2. Target Disambiguation + Profile (Default ON)
  3. Literature Search (Internal Methodology)
  4. Evidence Grading

What it can do on your machine

Read from SKILL.md and the folder at commit df37802. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md (its code samples are markdown, python and json).

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Hosts in commands or code, which the agent is likely to contact:

    • doi.org

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Tooluniverse Literature Deep Research loads about 8.2k tokens when it runs. Until then it costs about 171 tokens; SKILL.md has 1,854 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~171
When it runs · the whole SKILL.md, loaded when a task matches
~8.2k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 1,854 words (~8,199 tokens).

“A systematic approach to comprehensive literature research that starts with target disambiguation to prevent missing details, uses evidence grading to separate signal from noise, and produces a content-focused report with mandatory completeness sections.”

— opening of SKILL.md by wu-yc
name
tooluniverse-literature-deep-research

Read the full SKILL.md on GitHub

Files

Just SKILL.md in skills/literature/tooluniverse-literature-deep-research of wu-yc/LabClaw.

Open the folder on GitHubat commit df37802

Used in 2 other repositories

We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 2 other GitHub owners. This page covers the copy in wu-yc/LabClaw, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Tooluniverse Literature Deep Research next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Tooluniverse Literature Deep Research compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Tooluniverse Literature Deep Research this skillwu-yc/LabClaw1.1k2 repos~8.2kAutomated safety check: PassNone
Deep Research WorkflowTokenRhythm/opensquilla7.1k—~1.3kAutomated safety check: PassApache-2.0
Deep Researchsanjay3290/ai-skills4329 repos~683Automated safety check: NotesApache-2.0
Academic Research PipelineImbad0202/academic-research-skills51k—~15kAutomated safety check: PassCustom licence
Academic Research Suite for CodexImbad0202/academic-research-skills-codex12k—~12kAutomated safety check: PassCustom licence
Deep Research Agent TeamImbad0202/academic-research-skills51k—~13kAutomated safety check: PassCustom licence

Similar skills

  • Deep Research Workflow

    TokenRhythm/opensquilla

    Runs multi-round research in three stages with a persisted state file, evidence tracking and a long-form report with per-claim citations.

    7.1k GitHub stars~1.3k tokensUpdated yesterday
    Research & ScienceAuto-check passed
  • Deep Research

    sanjay3290/ai-skills

    Execute autonomous multi-step research using Google Gemini Deep Research Agent.

    432 GitHub starsUsed in 9 repos~683 tokens
    Research & ScienceAuto-check: notes
  • Academic Research Pipeline

    Imbad0202/academic-research-skills

    Orchestrates a ten-stage academic workflow from research to finished manuscript, including integrity checks, two rounds of peer review and revision.

    51k GitHub stars~15k tokensUpdated yesterday
    Research & ScienceAuto-check passed
  • Academic Research Suite for Codex

    Imbad0202/academic-research-skills-codex

    A router skill that sends academic work such as literature reviews, drafting, citation checks, peer review and revision to the right workflow in the ARS suite.

    12k GitHub stars~12k tokensUpdated 7 days ago
    Research & ScienceAuto-check passed
  • Deep Research Agent Team

    Imbad0202/academic-research-skills

    Runs a 13-agent pipeline for rigorous academic research, from forming the question through systematic search, synthesis, bias checks and an APA 7.0 report.

    51k GitHub stars~13k tokensUpdated yesterday
    Research & ScienceAuto-check passed
  • Bmad Deep Recon

    delorenj/mcp-server-trello

    Decision-grade research, three ways: draft a deep-research prompt for the user to run in their own tool (ChatGPT, Gemini, Grok, Perplexity, …), process a finished research report — file it, distill…

    445 GitHub stars~2.3k tokensUpdated 17 days ago
    Research & ScienceAuto-check passed

More from wu-yc/LabClaw

All 68 skills in this repo
  • Retrieves chemical compound information from PubChem and ChEMBL with disambiguation, cross-referencing, and quality assessment.

    1.1k GitHub starsUsed in 2 repos~2.3k tokens
    Auto-check passed
  • Search and retrieve clinical practice guidelines across 12+ authoritative sources including NICE, WHO, ADA, AHA/ACC, NCCN, SIGN, CPIC, CMA, CTFPHC, GIN, MAGICapp, PubMed, EuropePMC, TRIP, and…

    1.1k GitHub starsUsed in 2 repos~4.9k tokens
    Auto-check passed
  • Generate comprehensive disease research reports using 100+ ToolUniverse tools.

    1.1k GitHub starsUsed in 2 repos~4.7k tokens
    Auto-check passed
  • Identify drug repurposing candidates using ToolUniverse for target-based, compound-based, and disease-driven strategies.

    1.1k GitHub starsUsed in 2 repos~4.4k tokens
    Auto-check passed
  • Retrieves gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation, experiment quality assessment, and structured reports.

    1.1k GitHub starsUsed in 2 repos~2.6k tokens
    Auto-check passed
  • Perform comprehensive gene enrichment and pathway analysis using gseapy (ORA and GSEA), PANTHER, STRING, Reactome, and 40+ ToolUniverse tools.

    1.1k GitHub starsUsed in 2 repos~4k tokens
    Auto-check passed

Works with

Questions about Tooluniverse Literature Deep Research

What does Tooluniverse Literature Deep Research do?

Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction. Tooluniverse Literature Deep Research is an agent skill from wu-yc/LabClaw. Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction.

When should I use Tooluniverse Literature Deep Research?

Tooluniverse Literature Deep Research fits situations like: users need thorough literature reviews; target profiles; verify specific claims from the literature.

How do I install Tooluniverse Literature Deep Research in Claude Code?

Run `npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a claude-code`. Or copy the skill folder (skills/literature/tooluniverse-literature-deep-research in wu-yc/LabClaw) into .claude/skills/tooluniverse-literature-deep-research in your project. Claude Code loads it when a task matches its description.

How do I install Tooluniverse Literature Deep Research in Codex?

Run `npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a codex`. Or copy the skill folder (skills/literature/tooluniverse-literature-deep-research in wu-yc/LabClaw) into .agents/skills/tooluniverse-literature-deep-research in your project. Codex loads it when a task matches its description.

Can I use Tooluniverse Literature Deep Research in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wu-yc/LabClaw --skill tooluniverse-literature-deep-research -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/tooluniverse-literature-deep-research, .gemini/skills/tooluniverse-literature-deep-research, .github/skills/tooluniverse-literature-deep-research and .opencode/skills/tooluniverse-literature-deep-research in your project.

What does Tooluniverse Literature Deep Research need to run?

SKILL.md names no scripts, command-line tools or credentials: Tooluniverse Literature Deep Research is instructions for the agent only.

Does Tooluniverse Literature Deep Research access the network?

SKILL.md names 1 domain. In commands or code: doi.org; the agent is likely to contact it when it follows the instructions. This is read from the text; nothing was executed.

Is Tooluniverse Literature Deep Research safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Tooluniverse Literature Deep Research use?

No licence was found for Tooluniverse Literature Deep Research or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Tooluniverse Literature Deep Research use?

About 8.2k tokens (SKILL.md is roughly 33k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Tooluniverse Literature Deep Research?

Skills that share tags, products or a category with Tooluniverse Literature Deep Research: Deep Research Workflow (TokenRhythm/opensquilla, 7.1k stars), Deep Research (sanjay3290/ai-skills, 432 stars), Academic Research Pipeline (Imbad0202/academic-research-skills, 51k stars) and Academic Research Suite for Codex (Imbad0202/academic-research-skills-codex, 12k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Tooluniverse Literature Deep Research?

wu-yc (a GitHub user) maintains it in wu-yc/LabClaw, which has 1,055 GitHub stars. The repository holds 68 skills in this directory. The repository was last updated on March 19, 2026.

Source: wu-yc/LabClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.