Research & Science · Model Context Protocol · For researchers

Deep research with hyperresearch, for Claude Code and OpenAI Codex.

jordan-gibbs/hyperresearch

Read the open paper and write study annotations into its PDF with zotero-cli - a context box on the title, a four-part summary on the abstract, role-coded abstract highlights, one box per figure…

54yyyu/zotero-mcp

Build and use a persistent, citation-traceable knowledge wiki from documents, research papers, notes, or project documentation.

atomicstrata/llm-wiki-compiler

Search, download, and read academic papers from 20+ sources (arXiv, PubMed, Semantic Scholar, CrossRef, etc).

openags/paper-search-mcp

Writes the research-status literature review and critique section of an NSFC grant proposal, backed by a bundled multi-source literature search.

HuiyuLi-2000/Chinese-Grant-Writer-Skills

A skill your agent uses when finding, comparing, reading, or monitoring arXiv papers, including requests for abstracts, citation graphs, original LaTeX, section-level technical details, or…

blazickjp/arxiv-mcp-server

A skill your agent uses when users ask to 找文献、做文献检索、查论文、查临床试验、核验引用、去重文献、设计 PubMed/MeSH 检索式、追踪上下游引文、解析 DOI/PMID/PMCID/arXiv/OpenAlex/Semantic Scholar/NCT ID， 或导出 RIS、BibTeX、NBIB、ENW；also use for…

wp-a/nature-academic-search

Search and analyze research papers, find related work, summarize key ideas.

CurryTang/Amadeus

Get a deep critical review of research idea from GPT via Codex MCP.

GRIND-Lab-Core/night_owl_research_agent

Turns a vague research direction into a focused, problem-anchored method plan through up to five review rounds with a second model.

zjYao36/Auto-Research-Refine

Read and search GitHub repository documentation via gitmcp.io MCP service.

AgentTeam-TaichuAI/ScienceClaw

Search, download, and read academic papers through the paper-search MCP tools (mcppaper-search), covering arXiv, PubMed, bioRxiv, Semantic Scholar, Crossref, OpenAlex and 15+ other sources.

openags/paper-search-mcp

Query journal indexing/inclusion status on CNKI - check which databases include a journal (北大核心, CSSCI, CSCD, SCI, EI, etc.), get impact factors and evaluation data.

cookjohn/cnki-skills

Find official portals, APIs, and download paths for authoritative primary data sources (governments, international organizations, research institutions, etc.).

MLT-OSS/FirstData

A skill your agent uses for genetics, genome source, variant, gene, phenotype, disease, screen, pharmacogenomics, and Genomi install/setup maintenance questions.

exon-research/genomi

Inspect, validate, summarize, and render local Stata-MCP audit evidence under .statamcp.

SepineTam/mcp-for-stata

Deterministic deep research via RivalSearchMCP. An agent skill from damionrashford/RivalSearchMCP.

damionrashford/RivalSearchMCP

Searches the live web with citations through perplexity-mcp v2 tools or a bundled Python REST client, with focused ask, deep research and detached tasks.

escapeWu/perplexity-ai

Finds papers across literature sources, verifies and converts citations, builds MeSH strategies and audits independent citations of a paper.

Yuan1z0825/nature-skills

Multi-source literature search, citation verification, MeSH search strategy, citation file management (.nbib/.ris/.bib conversion), and reference management (BibTeX, related articles, ID conversion)…

jing1312/nature-figure-skill

Full-featured CLI for Zotero reference management. An agent skill from PiaoyangGuohai1/cli-anything-zotero.

PiaoyangGuohai1/cli-anything-zotero

学术文献检索与论文获取调度器，基于 paper-search CLI，而不是 MCP server. An agent skill from dr-dumpling/paper-search-cli.

dr-dumpling/paper-search-cli

Evaluate Jacobian reliability using recently resolved conjectures as held-out probes.

morluto/jacobian

A skill your agent uses when the user asks to research a topic deeply, gather intelligence, or build a knowledge base.

qa10devteam/behive

Write comprehensive literature reviews for medical imaging AI research.

LeonChaoX/qinyan-academic-skills

A skill your agent uses when the user needs academic paper retrieval — searching scientific literature by author/year/journal, finding paper chunks for RAG-style citations, or expanding original…

opendatalab/Sciverse-Agent-Tools

Explains how to run, integrate and debug the deep-research-mcp project through its CLI, Python API or MCP server, with OpenAI, Gemini and DR-Tulu backends.

pminervini/deep-research-mcp

Deep web-research methodology for the interceptor browser surface — investigate a topic the way researchers, intelligence analysts, investigative journalists, private investigators, and OSINT…

Hacker-Valley-Media/Interceptor

A skill your agent uses when the user needs to inspect, audit, or diagnose the safety of a Stata do-file.

SepineTam/mcp-for-stata

Extract full paper details from a CNKI paper page including title, authors, affiliations, abstract, keywords, fund, classification.

cookjohn/cnki-skills

A skill your agent uses when a developer wants to build a new healthcare or life sciences agent, structure tools and system prompts for an HCLS workflow, or create a Strands agent with…

aws-samples/amazon-bedrock-agents-healthcare-lifesciences

Run or continue patient-authorized, genome-informed GenomiLab investigations in the current Claude, Codex, or other MCP agent task.

exon-research/genomi

Author, package, validate, or run mathematical evaluations as Jacobian Harbor datasets.

morluto/jacobian

Access and configure a user's local or cloud Zotero library without MCP by executing the bundled JSON CLI.

Bubble-OoO/zotero-research-assistant-skill

Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.

FreedomIntelligence/OpenClaw-Medical-Skills

A skill your agent uses when you need to find Stata on the user's machine or configure stata-mcp to use it.

SepineTam/mcp-for-stata

Use ChemGraph Python and CLI workflows, agent-written batch scripts, and attached chemistry MCP tools.

argonne-lcf/ChemGraph

Run, diagnose, reproduce, and validate ANSYS Fluent CFD simulations of forced-convection autoclaves using Fluent MCP or PyFluent.

Cai-aa/CAE-Agent-Hub

Build and query a local vector database + GraphRAG over your entire reference library (Zotero or a PDF folder) for literature review.

joshzyj/open-scholar-skill

Build a sourced research dossier for one therapeutic indication — patient population, epidemiology, disease biology, standard of care, regulatory path, and landmark trials.

xuzhougeng/wisp-science

Generate RFC and IMPL documents from a user-provided feature/fix description.

SepineTam/mcp-for-stata

Design or audit a Jacobian operation’s mathematical contract, boundedness, exact results, and composition.

morluto/jacobian

Parse current CNKI search results page into structured paper data (title, authors, journal, date, citations).

cookjohn/cnki-skills

Searches the web, code, companies and people through the Exa MCP server, with notes on setup, the web_search_exa tool and treating results as untrusted data.

affaan-m/ECC

A skill your agent uses when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery.

ynulihao/AgentSkillOS

Evaluate and use SSH Remote Compute before choosing where to run GPU, high-memory, parallel, batch, model-inference, bioinformatics, or other long-running scientific work; supports short remote…

aipoch/open-science

A packaged Stata Runner skill via official MCP-for-Stata server including statado, adopackageinstall, help, readlog and getdatainfo tools.

SepineTam/mcp-for-stata

Performs deep research on a topic via deepresearch. An agent skill from study8677/repobrain.

study8677/repobrain