A skill your agent uses when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery.
$ npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install ynulihao/AgentSkillOS tooluniverse --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/ynulihao/AgentSkillOS.git skills-src && mkdir -p .claude/skills && cp -r skills-src/data/skill_seeds/tooluniverse .claude/skills/tooluniverse && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "tooluniverse" agent skill from https://github.com/ynulihao/AgentSkillOS/tree/main/data/skill_seeds/tooluniverse into .claude/skills/tooluniverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/ynulihao/AgentSkillOS/tree/main/data/skill_seeds/tooluniverseType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install ynulihao/AgentSkillOS tooluniverse --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ynulihao/AgentSkillOS.git skills-src && mkdir -p .agents/skills && cp -r skills-src/data/skill_seeds/tooluniverse .agents/skills/tooluniverse && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "tooluniverse" agent skill from https://github.com/ynulihao/AgentSkillOS/tree/main/data/skill_seeds/tooluniverse into .agents/skills/tooluniverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install ynulihao/AgentSkillOS tooluniverse --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ynulihao/AgentSkillOS.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/data/skill_seeds/tooluniverse .cursor/skills/tooluniverse && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "tooluniverse" agent skill from https://github.com/ynulihao/AgentSkillOS/tree/main/data/skill_seeds/tooluniverse into .cursor/skills/tooluniverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/ynulihao/AgentSkillOS.git --path data/skill_seeds/tooluniverse--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install ynulihao/AgentSkillOS tooluniverse --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ynulihao/AgentSkillOS.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/data/skill_seeds/tooluniverse .gemini/skills/tooluniverse && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "tooluniverse" agent skill from https://github.com/ynulihao/AgentSkillOS/tree/main/data/skill_seeds/tooluniverse into .gemini/skills/tooluniverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install ynulihao/AgentSkillOS tooluniverseInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/ynulihao/AgentSkillOS.git skills-src && mkdir -p .github/skills && cp -r skills-src/data/skill_seeds/tooluniverse .github/skills/tooluniverse && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "tooluniverse" agent skill from https://github.com/ynulihao/AgentSkillOS/tree/main/data/skill_seeds/tooluniverse into .github/skills/tooluniverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install ynulihao/AgentSkillOS tooluniverse --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ynulihao/AgentSkillOS.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/data/skill_seeds/tooluniverse .opencode/skills/tooluniverse && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "tooluniverse" agent skill from https://github.com/ynulihao/AgentSkillOS/tree/main/data/skill_seeds/tooluniverse into .opencode/skills/tooluniverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tooluniverse", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
tooluniverseA skill your agent uses when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery.
Tooluniverse is an agent skill from ynulihao/AgentSkillOS. Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery. This skill provides access to 600+ scientific tools including machine learning models, datasets, APIs, and analysis packages. Use when searching for scientific tools, executing computational biology workflows, composing multi-step research pipelines, accessing databases like OpenTargets/PubChem/UniProt/PDB/ChEMBL, performing tool discovery…
Its SKILL.md is about 2.5k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Bioinformatics, Drug discovery and cheminformatics and Protein structure and design. It works with UniProt and Model Context Protocol. The repository describes itself as: Build your agent from 200,000+ skills via skill RETRIEVAL & ORCHESTRATION.
3 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit c3cfae1. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
uvFrom the folder's file list and the shell code blocks in SKILL.md.
Links to these hosts (documentation or services it may open):
aiscientist.toolsgithub.comzitniklab.hms.harvard.eduFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Tooluniverse loads about 2.5k tokens when it runs. Until then it costs about 155 tokens; SKILL.md has 747 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Without a licence we can't republish the file, so here is its outline and opening line. It has 747 words (~2,498 tokens).
“ToolUniverse is a unified ecosystem that enables AI agents to function as research scientists by providing standardized access to 600+ scientific resources. Use this skill to discover, execute, and compose scientific tools across multiple research domains including bioinformatics, cheminformatics, genomics…”
Just SKILL.md in data/skill_seeds/tooluniverse of ynulihao/AgentSkillOS.
Open the folder on GitHubat commit c3cfae1
We found 12 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 3 other GitHub owners. This page covers the copy in ynulihao/AgentSkillOS, which our catalogue first saw on October 7, 2026.
Tooluniverse next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Tooluniverse this skillynulihao/AgentSkillOS | 617 | 3 repos | ~2.5k | Automated safety check: Pass | None | |
| Hcls Build Agentaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | — | ~885 | Automated safety check: Pass | MIT-0 | |
| Ggetdavila7/claude-code-templates | 32k | 11 repos | ~6.3k | Automated safety check: Pass | MIT | |
| TooluniverseAgentTeam-TaichuAI/ScienceClaw | 670 | — | ~1.2k | Automated safety check: Pass | None | |
| Hcls Get Startedaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | — | ~607 | Automated safety check: Pass | MIT-0 | |
| Research Biomedical Databasesaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | — | ~3.1k | Automated safety check: Pass | MIT-0 |
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
A skill your agent uses when a developer wants to build a new healthcare or life sciences agent, structure tools and system prompts for an HCLS workflow, or create a Strands agent with…
davila7/claude-code-templates
CLI/Python toolkit for rapid bioinformatics queries. An agent skill from davila7/claude-code-templates.
AgentTeam-TaichuAI/ScienceClaw
Access 1000+ scientific tools through ToolUniverse for drug discovery, protein analysis, genomics, literature search, clinical data, ADMET prediction, molecular docking, and more.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
A skill your agent uses when a developer asks how to get started building healthcare or life sciences agents, wants to understand the HCLS Agents Toolkit, or asks what's available in this repository.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
A skill your agent uses when querying biomedical databases (UniProt, ClinVar, gnomAD, PDB, Reactome, Open Targets, etc.) via the Biomni AgentCore Gateway MCP server.
aipoch/medical-research-skills
Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or…
ynulihao/AgentSkillOS
Generate or edit images using AI models (FLUX, Gemini). An agent skill from ynulihao/AgentSkillOS.
ynulihao/AgentSkillOS
Transform data into compelling narratives using visualization, context, and persuasive structure.
ynulihao/AgentSkillOS
Master advanced prompt engineering techniques to maximize LLM performance, reliability, and controllability in production.
ynulihao/AgentSkillOS
Create employment contracts, offer letters, and HR policy documents following legal best practices.
ynulihao/AgentSkillOS
Master SQL query optimization, indexing strategies, and EXPLAIN analysis to dramatically improve database performance and eliminate slow queries.
ynulihao/AgentSkillOS
Process multimedia files with FFmpeg (video/audio encoding, conversion, streaming, filtering, hardware acceleration), ImageMagick (image manipulation, format conversion, batch processing, effects…
Works with
Categories
A skill your agent uses when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery. Tooluniverse is an agent skill from ynulihao/AgentSkillOS. Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery.
Tooluniverse fits situations like: working with scientific research tools and workflows across bioinformatics; cheminformatics; structural biology; searching for scientific tools.
Run `npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a claude-code`. Or copy the skill folder (data/skill_seeds/tooluniverse in ynulihao/AgentSkillOS) into .claude/skills/tooluniverse in your project. Claude Code loads it when a task matches its description.
Run `npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a codex`. Or copy the skill folder (data/skill_seeds/tooluniverse in ynulihao/AgentSkillOS) into .agents/skills/tooluniverse in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add ynulihao/AgentSkillOS --skill tooluniverse -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/tooluniverse, .gemini/skills/tooluniverse, .github/skills/tooluniverse and .opencode/skills/tooluniverse in your project.
Going by SKILL.md and its folder, Tooluniverse needs the command-line tools its instructions call (uv). Our summary lists: Python 3.
SKILL.md names 3 domains. As links in the text: aiscientist.tools, github.com and zitniklab.hms.harvard.edu. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
No licence was found for Tooluniverse or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
About 2.5k tokens (SKILL.md is roughly 10k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Tooluniverse: Hcls Build Agent (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars), Gget (davila7/claude-code-templates, 32k stars), Tooluniverse (AgentTeam-TaichuAI/ScienceClaw, 670 stars) and Hcls Get Started (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
ynulihao (a GitHub user) maintains it in ynulihao/AgentSkillOS, which has 617 GitHub stars. The repository holds 26 skills in this directory. The repository was last updated on March 7, 2026.
Source: ynulihao/AgentSkillOS on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
