Research & Science · Docker

Predicts how small molecules bind to a protein with DiffDock, covering batch docking, pose ranking by confidence and checks on the results; not for binding affinity.

K-Dense-AI/scientific-agent-skills

Generate sashimi-style genome visualization plots (coverage, line, heatmap, IGV read-by-read, HiC, circRNA, motif) from BAM/bigWig/depth/HiC inputs.

ygidtu/trackplot

Cut a new tagged release of the dockstore/dockstore webservice (alpha/beta/rc/stable/hotfix), following the dockstore-deploy wiki's Hubflow + Maven CI-friendly-versions process.

dockstore/dockstore

Snapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt /…

pedrohcgs/claude-code-my-workflow

Execute runnable docs snippets and examples inside a disposable Docker Compose sandbox (runner container + local Supabase stack via supabase start).

supabase/supabase

Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.

ClawBio/ClawBio

Generate and analyze DNA sequences using NVIDIA's Evo 2 BioNeMo NIM microservice.

NVIDIA/skills

Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone.

NVIDIA/skills

First-time setup, environment configuration, and model-weight installation for Proteina-Complexa.

NVIDIA-BioNeMo/bionemo-agent-toolkit

Run DiffDock molecular docking via NVIDIA NIM to predict small-molecule binding poses against protein targets.

NVIDIA/skills

A skill your agent uses for OpenFold2, NVIDIA's BioNeMo NIM microservice for monomer protein structure prediction.

NVIDIA/skills

Run RFDiffusion protein backbone design via NVIDIA NIM. An agent skill from NVIDIA/skills.

NVIDIA/skills

Deep learning-based variant calling with Google DeepVariant.

FreedomIntelligence/OpenClaw-Medical-Skills

Use Boltz2 NIM for biomolecular structure prediction and binding affinity.

NVIDIA/skills

Designs pegRNAs and nicking guides for prime editing (PE) -- choosing the nick/strand, tuning the primer-binding site (PBS) and reverse-transcription template (RTT) as a per-locus panel, selecting…

GPTomics/bioSkills

Runs and configures curated nf-core community Nextflow pipelines (rnaseq, sarek, atacseq, methylseq, ampliseq, taxprofiler, fetchngs) reproducibly, pinning the pipeline revision with -r and…

GPTomics/bioSkills

Authors bioinformatics pipelines in WDL (Workflow Description Language) run by Cromwell or miniwdl, targeting the GATK/Broad and Terra/AnVIL/BioData Catalyst cloud ecosystem, with tasks, workflows…

GPTomics/bioSkills

This skill covers reproducible research pipelines and replication packages.

brycewang-stanford/Auto-Empirical-Research-Skills

This skill should be used when user encounters "paper-search MCP error", "Docker not found", "Docker not running", "paper search not working", or needs help configuring paper search integration.

fcakyon/claude-codex-settings

Implement open science practices for a social science study.

joshzyj/open-scholar-skill

Build, document, test, and validate a journal-ready replication package for social science research.

joshzyj/open-scholar-skill

Guide for setup arXiv paper search MCP server using Docker MCP

NeoLabHQ/context-engineering-kit