Repository
NVIDIA-BioNeMo/bionemo-agent-toolkit agent skills
- skills
- 14
- GitHub stars
- 478
GitHub description: “Turn any agent into a life science expert with NVIDIA BioNeMo skills.”
- Stars
- 478 (74 forks)
- Licence
- Unknown
- Last push
- Oct 2026
- Created
- Jun 2026
Install all skills
npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkitAdd --skill <name> for a single skill and -a <agent> to choose the agent (see the agent guides).
Skills in NVIDIA-BioNeMo/bionemo-agent-toolkit, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Run a complete protein binder design campaign with NVIDIA Proteina-Complexa: resolve a target structure and hotspots from a name/sequence/PDB, co-design binder sequence+structure with reward-guided… | NVIDIA-BioNeMo/ | 478 | — | ~3.1k | Automated safety check: Notes | Apache-2.0 | today |
| 2 | Route NVIDIA Parabricks pbrun tools, assess GPU/runtime readiness, and provide version-aware command guidance for FASTQ/BAM processing, RNA-seq, variant calling, BAM QC, and GVCF workflows. | NVIDIA-BioNeMo/ | 478 | — | ~2.1k | Automated safety check: Pass | Apache-2.0 | today |
| 3 | Orchestrate an end-to-end de novo protein binder design campaign against a protein target by composing BioNeMo NIM skills. | NVIDIA-BioNeMo/ | 478 | — | ~1.4k | Automated safety check: Notes | Apache-2.0 | today |
| 4 | Build and debug cuEquivariance irreps, custom Irrep subclasses, Clebsch-Gordan tensor products, and equivariant or segmented polynomials. | NVIDIA-BioNeMo/ | 478 | — | ~1.9k | Automated safety check: Pass | Unknown | today |
| 5 | A skill your agent uses when accelerating existing genomics workflows with NVIDIA Parabricks, improving runtime or price/performance, converting pipeline steps to GPUs, or comparing CPU and GPU… | NVIDIA-BioNeMo/ | 478 | — | ~3.3k | Automated safety check: Pass | Apache-2.0 | today |
| 6 | End-to-end Proteina-Complexa design pipeline driver. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit. | NVIDIA-BioNeMo/ | 478 | — | ~4.1k | Automated safety check: Notes | Unknown | today |
| 7 | Standalone evaluation of an existing PDB directory with Proteina-Complexa. | NVIDIA-BioNeMo/ | 478 | — | ~3.3k | Automated safety check: Notes | Unknown | today |
| 8 | A skill your agent uses whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over… | NVIDIA-BioNeMo/ | 478 | — | ~3.2k | Automated safety check: Notes | Unknown | today |
| 9 | A skill your agent uses whenever the user wants to add, register, edit, list, show, or validate a Proteina-Complexa design target for any pipeline — protein binder (default), ligand binder, or AME /… | NVIDIA-BioNeMo/ | 478 | — | ~3.7k | Automated safety check: Notes | Unknown | today |
| 10 | Write code that calls the installed nvMolKit Python API for GPU-accelerated, batched RDKit-style operations - Morgan fingerprints, Tanimoto/cosine similarity, ETKDG conformer embedding, MMFF/UFF… | NVIDIA-BioNeMo/ | 478 | — | ~4.4k | Automated safety check: Pass | Apache-2.0 | today |
| 11 | First-time setup, environment configuration, and model-weight installation for Proteina-Complexa. | NVIDIA-BioNeMo/ | 478 | — | ~3.5k | Automated safety check: Notes | Unknown | today |
| 12 | Continue pretraining from an existing KERMT checkpoint. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit. | NVIDIA-BioNeMo/ | 478 | — | ~3.8k | Automated safety check: Pass | Apache-2.0 | today |
| 13 | 13.Kermt Embed Extract per-molecule embeddings from any encoder-bearing KERMT checkpoint (groverbase / cmim / hybrid / finetuned). | NVIDIA-BioNeMo/ | 478 | — | ~1.7k | Automated safety check: Pass | Apache-2.0 | today |
| 14 | Finetune a pretrained KERMT encoder on a labeled CSV. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit. | NVIDIA-BioNeMo/ | 478 | — | ~3.9k | Automated safety check: Pass | Apache-2.0 | today |
Questions, answered from the data.
What is the best skill in NVIDIA-BioNeMo/bionemo-agent-toolkit?
Complexa Binder Design from NVIDIA-BioNeMo/bionemo-agent-toolkit ranks first of the 14 skills in NVIDIA-BioNeMo/bionemo-agent-toolkit listed here, with the highest score: its repository has 478 GitHub stars, its SKILL.md loads about 3.1k tokens and it has informational notes only in the automated safety check. Next come Parabricks and Protein Binder Design.
Are the skills in NVIDIA-BioNeMo/bionemo-agent-toolkit official?
None yet. All 14 skills in NVIDIA-BioNeMo/bionemo-agent-toolkit listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How do I install all skills from NVIDIA-BioNeMo/bionemo-agent-toolkit?
Run npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit in your project: the open-source skills CLI installs the repository's skills into your coding agent's skills folder. To install a single skill, open its page here for the exact command.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.