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Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 2065 | 2065.Literature Search Comprehensive scientific literature search across PubMed, arXiv, bioRxiv, medRxiv. | wu-yc/ | 1.1k | 2 repos | ~1.4k | Automated safety check: Pass | MIT | 6 mo ago |
| 2066 | 2066.Medrxiv Search Search medRxiv medical preprints with natural language queries. | wu-yc/ | 1.1k | 2 repos | ~1.2k | Automated safety check: Pass | MIT | 6 mo ago |
| 2067 | 2067.Open Targets Search Search Open Targets drug-disease associations with natural language queries. | wu-yc/ | 1.1k | 2 repos | ~1.3k | Automated safety check: Pass | MIT | 6 mo ago |
| 2068 | Comprehensive drug-drug interaction (DDI) prediction and risk assessment. | wu-yc/ | 1.1k | 2 repos | ~813 | Automated safety check: Pass | No licence | 6 mo ago |
| 2069 | Comprehensive metabolomics research skill for identifying metabolites, analyzing studies, and searching metabolomics databases. | wu-yc/ | 1.1k | 2 repos | ~3k | Automated safety check: Notes | No licence | 6 mo ago |
| 2070 | 2070.Chembl Search Search ChEMBL bioactive molecules database with natural language queries. | wu-yc/ | 1.1k | 2 repos | ~1.2k | Automated safety check: Pass | MIT | 6 mo ago |
| 2071 | 2071.Cluster Ops One-shot recipes for adding, removing, or repositioning molecular fragments (adsorbates, water layers, ion clusters) on the active CatGo viewer structure. | Hello-QM/ | 205 | — | ~1.9k | Automated safety check: Pass | AGPL-3.0 | 19 days ago |
| 2072 | 2072.Bio Batch Processing Process multiple sequence files in batch using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2073 | Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 2074 | 2074.Bio Compressed Files Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2075 | Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2076 | Detects somatic mutations in circulating tumor DNA using variant callers optimized for low allele fractions with UMI-based error suppression. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 2077 | 2077.Bio De Deseq2 Basics Perform differential expression analysis using DESeq2 in R/Bioconductor. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 2078 | Detect and track antimicrobial resistance genes using AMRFinderPlus and ResFinder with epidemiological context. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 2079 | Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 2080 | Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2081 | Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2082 | 2082.Bio Filter Sequences Filter and select sequences by criteria (length, ID, GC content, patterns) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 2083 | Convert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 2084 | Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 2085 | Design guides for cytosine and adenine base editing using editing window optimization and BE-Hive outcome prediction. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 2086 | Design guide RNAs for CRISPR-Cas9/Cas12a experiments using CRISPRscan and local scoring algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 2087 | Design homology-directed repair donor templates for CRISPR knock-ins using primer3-py. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2088 | Predict CRISPR off-target sites using Cas-OFFinder and CFD scoring algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2089 | Design pegRNAs for prime editing using PrimeDesign algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 2090 | Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2091 | Cell segmentation from multiplexed tissue images. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 2092 | Predict B-cell and T-cell epitopes using BepiPred, IEDB tools, and structure-based methods for vaccine and antibody design. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 2093 | Align long reads using minimap2 for Oxford Nanopore and PacBio data. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 2094 | 2094.Bio Longread Medaka Polish assemblies and call variants from Oxford Nanopore data using medaka. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 2095 | Species abundance estimation using Bracken with Kraken2 output. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 2096 | Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 2097 | Profile functional potential of metagenomes using HUMAnN3 and similar tools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 2098 | Marker gene-based taxonomic profiling using MetaPhlAn 4. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 2099 | Track bacterial strains using MASH, sourmash, fastANI, and inStrain. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 2100 | Bisulfite sequencing read alignment using Bismark with bowtie2/hisat2. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 2101 | Preprocessing and harmonization of multi-omics data before integration. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 2102 | Multi-Omics Factor Analysis (MOFA2) for unsupervised integration of multiple data modalities. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 2103 | 2103.Bio Paired End Fastq Handle paired-end FASTQ files (R1/R2) using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 2104 | Perform geometric calculations on protein structures using Biopython Bio.PDB. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2105 | 2105.Bio Pdb Structure Io Parse and write protein structure files using Biopython Bio.PDB. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 2106 | Modify protein structures using Biopython Bio.PDB. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 2107 | Navigate protein structure hierarchy using Biopython Bio.PDB SMCRA model. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 2108 | Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2109 | Data-independent acquisition (DIA) proteomics analysis with DIA-NN and other tools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 2110 | Peptide-spectrum matching and protein identification from MS/MS data. | FreedomIntelligence/ | 3.1k | 1 repo | ~983 | Automated safety check: Pass | No licence | 2 mo ago |
| 2111 | Post-translational modification analysis including phosphorylation, acetylation, and ubiquitination. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 2112 | Protein quantification from mass spectrometry data including label-free (LFQ, intensity-based), isobaric labeling (TMT, iTRAQ), and metabolic labeling (SILAC) approaches. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
