Research & Science · aipoch/medical-research-skills

A skill your agent uses to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally generate group-wise ESTIMATE…

aipoch/medical-research-skills

ETE (Environment for Tree Exploration) toolkit for phylogenetic and hierarchical tree analysis; use it when you need to parse/manipulate Newick/NHX trees, detect duplication/speciation events…

aipoch/medical-research-skills

A skill your agent uses when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk…

aipoch/medical-research-skills

Generate standardized figure legends for scientific figures and charts; use when preparing publication-ready legends that summarize design, variables, sample size, and key statistical notes.

aipoch/medical-research-skills

Writes complete, publication-grade figure legends that can stand on their own.

aipoch/medical-research-skills

Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype) for single or…

aipoch/medical-research-skills

A skill your agent uses when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory…

aipoch/medical-research-skills

Search for gene expression DataSets and Profiles in the NCBI GEO database.

aipoch/medical-research-skills

Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or…

aipoch/medical-research-skills

Simulate structured grant peer review for biomedical proposals; use when stress-testing significance, innovation, approach, feasibility, and reviewer-facing weaknesses before submission.

aipoch/medical-research-skills

Assist with biomedical grant proposal drafting, structure, and revision; use when preparing fundable proposal sections, aligning aims and methods, or improving reviewer-facing clarity.

aipoch/medical-research-skills

Writes Specific Aims pages for grant applications. An agent skill from aipoch/medical-research-skills.

aipoch/medical-research-skills

A skill your agent uses to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object.

aipoch/medical-research-skills

A skill your agent uses when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample…

aipoch/medical-research-skills

Assists researchers in generating INPLASY registration content for meta-analyses from a title and optional protocol.

aipoch/medical-research-skills

Access the KEGG database API to retrieve biological data (genes, pathways, compounds, drugs).

aipoch/medical-research-skills

A skill your agent uses when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted…

aipoch/medical-research-skills

Acknowledges limitations in sample, design, measurement, and validation in a professional way that improves credibility without undermining the whole paper.

aipoch/medical-research-skills

A skill your agent uses when optimizing LinkedIn profiles for doctors, physicians, nurses, healthcare professionals, or medical researchers.

aipoch/medical-research-skills

Generate statistics for publication-year and journal distributions from local references or PDFs; use when you need standardized Year/Journal tables and a summary without any network access.

aipoch/medical-research-skills

Use this bioinformatics data analysis skill to construct a database-driven lncRNA-mRNA regulatory network from target lncRNA and/or gene lists by projecting shared miRNA evidence from local ceRNA…

aipoch/medical-research-skills

Medicinal chemistry screening filters for compound prioritization; use when you need to apply drug-likeness rules, PAINS/structural alerts, and complexity metrics to triage or optimize libraries.

aipoch/medical-research-skills

Generates a meta-analysis baseline characteristics section (text + table) from raw data.

aipoch/medical-research-skills

Generates a Meta-analysis results section description for funnel plots, including statistical tables (Egger's, Begg's, Trim & Fill) and figure legends.

aipoch/medical-research-skills

Generates Meta-Analysis research titles based on user keywords, utilizing PubMed search results if available, or creative generation otherwise.

aipoch/medical-research-skills

Extract experimental methods from one or more papers into a structured protocol-oriented summary; use when comparing methods across studies or drafting reproducible procedures.

aipoch/medical-research-skills

Generate a complete NSFC (National Natural Science Foundation of China) General Program grant application in Chinese, following the 2026 official template.

aipoch/medical-research-skills

Access the OpenAlex database (240M+ scholarly works) for bibliometric analysis, literature search, and citation tracking; use when you need to query works/authors/institutions/concepts without an…

aipoch/medical-research-skills

Clinical research outcome extraction for meta-analysis. An agent skill from aipoch/medical-research-skills.

aipoch/medical-research-skills

A skill your agent uses when writing medical school personal statements, residency application essays, fellowship statements, or graduate school admissions essays.

aipoch/medical-research-skills

Reorganizes a paper into a storyline suitable for scientific posters.

aipoch/medical-research-skills

A skill your agent uses when you need a standardized R CLI workflow to build a protein-protein interaction network from a local gene list and an offline STRING cache, export node and edge tables…

aipoch/medical-research-skills

Assists researchers in generating PROSPERO registration content for meta-analyses from a title and optional protocol.

aipoch/medical-research-skills

Build complex Boolean query strings for precise PubMed/MEDLINE literature retrieval.

aipoch/medical-research-skills

Generate ~5 actionable research topic recommendations by querying PubMed E-utilities; use when a user provides a research direction/constraints and needs evidence-backed topic ideas quickly.

aipoch/medical-research-skills

Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for…

aipoch/medical-research-skills

Comprehensive tool for computational mass spectrometry using PyOpenMS; use when you need to read/write MS formats (mzML/mzXML/MGF), run signal processing (smoothing/peak picking), detect isotope…

aipoch/medical-research-skills

Therapeutics Data Commons (PyTDC) for AI-ready therapeutic ML datasets and benchmarks; use it when you need standardized dataset loading, meaningful splits (e.g., scaffold/cold-start), and…

aipoch/medical-research-skills

Automates critical appraisal and quality assessment for research papers by analyzing text against established methodological standards (such as risk of bias tools, quality checklists, or reporting…

aipoch/medical-research-skills

Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report.

aipoch/medical-research-skills

Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report.

aipoch/medical-research-skills

Automatically finds and ranks PubMed references for each sentence in scientific text; use when you need titles, DOIs, and brief recommendation reasons from the PubMed E-utilities API.

aipoch/medical-research-skills

Download academic papers from open-access sources when the user provides a DOI/arXiv ID or requests a keyword-based paper search, and return the saved PDF path.

aipoch/medical-research-skills

A skill your agent uses when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score…

aipoch/medical-research-skills

Determines the appropriate Risk of Bias assessment scale for a medical study based on its design (RCT, Cohort, etc.), using PubMed metadata lookup or text analysis.

aipoch/medical-research-skills

A skill your agent uses when converting medical text between academic and patient-friendly tones, translating medical jargon for patients, adapting research papers for public audiences, or rewriting…

aipoch/medical-research-skills

A skill your agent uses when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE…

aipoch/medical-research-skills

Direct REST API access to UniProt for protein search, entry retrieval, and identifier mapping; use when you need programmatic UniProtKB queries or cross-database ID conversion.

aipoch/medical-research-skills