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aipoch/medical-research-skills
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Complete workflow for generating academic research posters from PDF literature; use when you need to extract paper content from PDFs and produce a LaTeX-based poster… | aipoch/ | 1.9k | — | ~2.2k | Automated safety check: Pass | MIT | 24 days ago |
| 2 | Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 24 days ago |
| 3 | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. | aipoch/ | 1.9k | — | ~3.7k | Automated safety check: Pass | MIT | 24 days ago |
| 4 | A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. | aipoch/ | 1.9k | — | ~1.8k | Automated safety check: Pass | MIT | 24 days ago |
| 5 | Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for journal… | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 6 | Creates academic-poster writing packages for LaTeX using beamerposter, tikzposter, or baposter. | aipoch/ | 1.9k | — | ~1.3k | Automated safety check: Pass | MIT | 24 days ago |
| 7 | End-to-end Neuropixels extracellular electrophysiology analysis (SpikeGLX/Open Ephys/NWB) including preprocessing, motion correction, Kilosort4 spike sorting, QC metrics, and Allen/IBL-style… | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 24 days ago |
| 8 | Expert system for generating comprehensive biomedical phenotype introductions with structured academic content. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 9 | Multi-database literature search and search-strategy design that outputs structured, reproducible result lists; use when you need reference retrieval, systematic searching, review topic selection… | aipoch/ | 1.9k | — | ~2k | Automated safety check: Pass | MIT | 24 days ago |
| 10 | Generate clinical trial protocols for medical devices or drugs. | aipoch/ | 1.9k | 2 repos | ~5.2k | Automated safety check: Pass | MIT | 24 days ago |
| 11 | Generate medical referral letters with patient summary, reason for referral, key findings, and requested next steps; use when transferring care or communicating with another clinician or department. | aipoch/ | 1.9k | — | ~2.5k | Automated safety check: Pass | MIT | 24 days ago |
| 12 | Venue-specific LaTeX templates, formatting requirements, and submission guidelines for journals, conferences, posters, and grants—use when a target venue imposes strict layout, page limits… | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 24 days ago |
| 13 | Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. | aipoch/ | 1.9k | — | ~2.5k | Automated safety check: Pass | MIT | 24 days ago |
| 14 | Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. | aipoch/ | 1.9k | 2 repos | ~4k | Automated safety check: Pass | MIT | 24 days ago |
| 15 | Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. | aipoch/ | 1.9k | 1 repo | ~2.6k | Automated safety check: Pass | MIT | 24 days ago |
| 16 | Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger filtering for… | aipoch/ | 1.9k | 1 repo | ~2.9k | Automated safety check: Pass | MIT | 24 days ago |
| 17 | Generates submission-ready Elsevier/SCI Highlights from manuscript text or extracted PDF/DOCX/TXT content. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 18 | Design and simulate adaptive clinical trials with interim analyses, decision rules, and operating-characteristic summaries; use when planning adaptive designs or comparing stopping, enrichment, or… | aipoch/ | 1.9k | — | ~3k | Automated safety check: Pass | MIT | 24 days ago |
| 19 | 19.Alphafold DB Access over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by UniProt accession. | aipoch/ | 1.9k | — | ~606 | Automated safety check: Pass | MIT | 24 days ago |
| 20 | 20.Arboreto Infer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory relationships. | aipoch/ | 1.9k | — | ~802 | Automated safety check: Pass | MIT | 24 days ago |
| 21 | Search and retrieve scientific preprints from arXiv; use it when you need to find papers by keyword/author/category, fetch metadata (abstract, DOI, PDF URL), or download PDFs for offline reading. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 22 | A skill your agent uses when determining author order on research manuscripts, assigning CRediT contributor roles for transparency, documenting individual contributions to collaborative projects, or… | aipoch/ | 1.9k | — | ~2.9k | Automated safety check: Pass | MIT | 24 days ago |
| 23 | Generate structured SOAP notes from clinical narratives, transcripts, or existing notes; use when the user needs de-identified clinical documentation organized into Subjective, Objective… | aipoch/ | 1.9k | — | ~4.3k | Automated safety check: Pass | MIT | 24 days ago |
| 24 | A skill your agent uses when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after… | aipoch/ | 1.9k | — | ~2.8k | Automated safety check: Pass | MIT | 24 days ago |
| 25 | 25.Biodbnet API Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 26 | 26.Biogrid Orcs Accesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 27 | Builds professional search strategies for PubMed, Embase, Web of Science, and similar databases. | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 24 days ago |
| 28 | Search, retrieve metadata, and download PDFs for bioRxiv preprints; use when you need to discover biology preprints by keywords/authors/date ranges and programmatically fetch their details. | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 24 days ago |
| 29 | 29.Bioservices Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially… | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 30 | Programmatic access to the BRENDA enzyme database via the SOAP API; use when you need kinetic constants (Km, kcat, Vmax), reaction equations, enzyme properties (pH/temperature optima, stability), or… | aipoch/ | 1.9k | — | ~1.6k | Automated safety check: Notes | MIT | 24 days ago |
| 31 | A skill your agent uses when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF… | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 24 days ago |
| 32 | Batch-unify typography (font family, size, italics) for Word table cells and embedded charts; use when you need consistent formatting across theses/reports without changing body text. | aipoch/ | 1.9k | — | ~3k | Automated safety check: Pass | MIT | 24 days ago |
| 33 | Query the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), chemical structure… | aipoch/ | 1.9k | — | ~1.3k | Automated safety check: Pass | MIT | 24 days ago |
| 34 | A skill your agent uses when estimating relative immune cell infiltration from a bulk expression matrix with a CIBERSORT-style nu-SVR deconvolution workflow based on an LM22 signature matrix… | aipoch/ | 1.9k | — | ~2.6k | Automated safety check: Pass | MIT | 24 days ago |
| 35 | Comprehensive citation management for academic research; use when you need to discover papers (Google Scholar/PubMed), extract/verify metadata (DOI/PMID/arXiv/URL), and produce validated, clean… | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 24 days ago |
| 36 | Build and visualize a citation network from a source/target CSV to identify key papers, communities, and emerging hotspots; use when you have citation pairs and need fast literature review or trend… | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 24 days ago |
| 37 | A skill your agent uses when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab… | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 24 days ago |
| 38 | Batch extracts and verifies structured information (PMID, title, abstract, methodology, results, etc.) from clinical research literature using PMIDs. | aipoch/ | 1.9k | — | ~1.2k | Automated safety check: Pass | MIT | 24 days ago |
| 39 | Query the ClinicalTrials.gov API v2 to search for clinical trials, retrieve detailed study protocols, and analyze recruitment status; use when you need to find trials by condition/drug, export… | aipoch/ | 1.9k | — | ~762 | Automated safety check: Pass | MIT | 24 days ago |
| 40 | Utilities for querying the NCBI ClinVar database to retrieve variant records, clinical significance, and phenotype relationships; use when searching variants by gene/condition/significance… | aipoch/ | 1.9k | — | ~856 | Automated safety check: Pass | MIT | 24 days ago |
| 41 | Adapt scientific abstracts to conference-specific word limits, section rules, and formatting constraints; use when reshaping an existing abstract for submission. | aipoch/ | 1.9k | — | ~2.2k | Automated safety check: Pass | MIT | 24 days ago |
| 42 | Generates academic conference tweets and summaries by filtering abstracts, translating content, and creating engaging titles. | aipoch/ | 1.9k | — | ~1.6k | Automated safety check: Pass | MIT | 24 days ago |
| 43 | A skill your agent uses when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization. | aipoch/ | 1.9k | — | ~2k | Automated safety check: Pass | MIT | 24 days ago |
| 44 | 44.Ctd API Accesses Comparative Toxicogenomics Database (CTD) for chemical, gene, disease, and pathway interaction data. | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 45 | A skill your agent uses when evaluating the clinical utility of a binary prediction model from a single clinical CSV file by fitting a logistic decision-curve model, plotting decision and… | aipoch/ | 1.9k | — | ~2.8k | Automated safety check: Pass | MIT | 24 days ago |
| 46 | A skill your agent uses when building a decision tree model in R and generating feature importance ranking outputs. | aipoch/ | 1.9k | — | ~2.1k | Automated safety check: Pass | MIT | 24 days ago |
| 47 | A skill your agent uses when screening differentially expressed genes from a bulk expression matrix between two user-specified groups, producing DEG tables, a volcano plot, and a clustered heatmap. | aipoch/ | 1.9k | — | ~2.1k | Automated safety check: Pass | MIT | 24 days ago |
| 48 | Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
