Data & Analytics · For researchers

Box Least Squares (BLS) periodogram for detecting transiting exoplanets and eclipsing binaries.

benchflow-ai/skillsbench

Quality control for pooled CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

FreedomIntelligence/OpenClaw-Medical-Skills

Calculates molecular descriptors and fingerprints using RDKit.

FreedomIntelligence/OpenClaw-Medical-Skills

Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request.

FreedomIntelligence/OpenClaw-Medical-Skills

Statistical testing for differentially abundant proteins between conditions.

FreedomIntelligence/OpenClaw-Medical-Skills

Run outcome-focused Firecrawl workflows that produce deliverables such as research reports, literature reviews over published papers, SEO audits, QA reports, lead lists, knowledge bases, website…

firecrawl/skills

Adversarially review an ETL dataset's data and metadata for factual accuracy — verifies metadata claims against the producer's own documentation (fetched from the links in snapshot .dvc files and…

owid/etl

Econometrics skill for generating publication-quality figures for top economics journals.

brycewang-stanford/Auto-Empirical-Research-Skills

Run data analytics and produce publication-quality tables and visualizations for social science research.

joshzyj/open-scholar-skill

Load when placing bulk RNA-seq samples on a single-cell reference's pseudotime axis (NNLS deconvolution + nearest-neighbour mapping).

TianGzlab/OmicsClaw

Load when ingesting a MaxQuant proteinGroups.txt, FragPipe combinedprotein.tsv, DIA-NN report, or generic CSV / TSV protein-quantification table — normalises columns to a standard schema, emits…

TianGzlab/OmicsClaw

Load when computing two-group differential protein abundance (group2 vs group1, log2FC + p-value + BH-adjusted FDR) via Welch t-test, equal-variance t-test, or Mann-Whitney on a wide protein ×…

TianGzlab/OmicsClaw

Load for Fisher over-representation analysis of protein identifiers against caller-supplied pathways.

TianGzlab/OmicsClaw

Load when summarising peptide identifications (PSM count, unique peptide count, distinct protein count, score / charge distributions) from a peptide-level CSV produced by MaxQuant / FragPipe / DIA-NN.

TianGzlab/OmicsClaw

Load when computing protein-table QC — proteins × samples count, missing-value rate, intensity CV (median + mean) — from a MaxQuant / FragPipe / DIA-NN protein-quantification CSV.

TianGzlab/OmicsClaw

Load when summarising PTM sites (phosphorylation, acetylation, ubiquitination, etc.) from a per-site CSV — site-class assignment (Olsen et al.

TianGzlab/OmicsClaw

Load when computing per-protein abundance from a peptide / PSM table via LFQ (intensity summation), iBAQ (intensity / tryptic peptide count), or spectral counting (PSMs per protein).

TianGzlab/OmicsClaw

Load when summarising cross-linking MS (XL-MS) results — intra/inter-protein link split, optional FDR filtering, distance-constraint validation against a per-crosslinker (DSS / BS3 / EDC / DSSO /…

TianGzlab/OmicsClaw

Load when removing ambient RNA contamination from droplet-based scRNA-seq using a simple subtraction path, CellBender, or SoupX.

TianGzlab/OmicsClaw

Load when computing cell-cell ligand-receptor communication on an annotated scRNA AnnData via builtin scorer, LIANA, CellPhoneDB, CellChat (R), or NicheNet (R).

TianGzlab/OmicsClaw

Load when testing whether cell-type / cluster proportions or neighbourhood densities differ between conditions in a multi-sample scRNA AnnData via Milo, scCODA, simple proportion screen, or R…

TianGzlab/OmicsClaw

Load when extracting gene programs (NMF / cNMF factorisation) and per-cell program usage scores from a non-negative scRNA AnnData.

TianGzlab/OmicsClaw

Load when ordering cells along a developmental trajectory in a normalised scRNA AnnData via DPT, Palantir, VIA, CellRank, Slingshot (R), or Monocle3 (R).

TianGzlab/OmicsClaw

Load when computing RNA velocity vectors on a scRNA AnnData with spliced / unspliced layers via scVelo (stochastic / dynamical / steady-state); dynamical mode additionally exports latent time.

TianGzlab/OmicsClaw

Load when running the foundational spatial transcriptomics QC + filtering + normalisation + HVG + PCA + neighbour-graph + Leiden pipeline on a Visium / Xenium / generic spatial AnnData.

TianGzlab/OmicsClaw

Load when inferring pseudotime / lineage trajectories on a preprocessed spatial AnnData via DPT (default — diffusion pseudotime), CellRank (terminal-state + fate-probability), or Palantir (waypoint…

TianGzlab/OmicsClaw

Load when estimating RNA velocity on a spatial AnnData with layers["spliced"] + layers["unspliced"] via scVelo (stochastic / deterministic / dynamical) or veloVI (deep generative).

TianGzlab/OmicsClaw

Python image processing for microscopy and bioimage analysis.

jaechang-hits/SciAgent-Skills

Generate Circos configuration files for circular genomics data visualization.

aipoch/medical-research-skills

Process CRISPR screening data to identify essential genes and hit candidates.

aipoch/medical-research-skills

Generates compliant medical case report articles for WeChat.

aipoch/medical-research-skills

Generate meta-analysis forest plots for binary classification data.

aipoch/medical-research-skills

Generate forest plots for meta-analysis of continuous data. An agent skill from aipoch/medical-research-skills.

aipoch/medical-research-skills

Automated generation of baseline characteristics tables (Table 1) for clinical research papers.

aipoch/medical-research-skills

Generate publication-ready baseline characteristics tables (Table 1) for clinical research papers with automatic variable type detection, appropriate statistics (mean±SD, median[IQR, n(%)), group…

aipoch/medical-research-skills

Add new sources to your knowledge base or re-scrape existing ones to pick up changes.

techwolf-ai/ai-first-toolkit

A skill your agent uses whenever the user wants to conduct an event study, create event study plots, test for parallel trends, implement difference-in-differences designs, or work with any panel…

brycewang-stanford/Auto-Empirical-Research-Skills

Design and format publication-quality figures: chart choice, color, scales, legends, captions, reproducibility.

brycewang-stanford/Auto-Empirical-Research-Skills

Complete survival analysis library in Python. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills.

brycewang-stanford/Auto-Empirical-Research-Skills

Numerical algorithms and computational techniques for statistics

brycewang-stanford/Auto-Empirical-Research-Skills

Design and format publication-quality tables: column order, row grouping, notes, precision, reproducibility.

brycewang-stanford/Auto-Empirical-Research-Skills

A skill your agent uses for the Monte Carlo and numerical-illustration component of an Econometric Theory (ET) paper — designing simulations that show finite-sample behavior tracks the asymptotics…

franklee16/academic-research-skills

A skill your agent uses when writing the response to a Field Crops Research (FCR) revision decision (major or minor) and revising the manuscript.

franklee16/academic-research-skills

A skill your agent uses when designing or defending the empirical identification of a Journal of Applied Econometrics (JAE) manuscript — a credible strategy applied to real data, with assumptions…

franklee16/academic-research-skills

A skill your agent uses when positioning a Journal of Business & Economic Statistics (JBES) methods paper against prior econometric and statistical methods.

franklee16/academic-research-skills

A skill your agent uses when planning around the Journal of Business & Economic Statistics (JBES) peer-review process — the multi-Co-Editor model, what method referees scrutinize, and the…

franklee16/academic-research-skills

A skill your agent uses when matching the research design to the claim for a Journal of Marketing Research (JMR) manuscript — experimental design (lab and field), causal identification…

franklee16/academic-research-skills

A skill your agent uses when choosing and defending the method for a Management Science (INFORMS) manuscript — selecting an analytical modeling approach (optimization, stochastic, game/economic…

franklee16/academic-research-skills