Data & Analytics · Python

Prepares, validates and runs DP-GEN simplify jobs that thin out repeated or redundant DeepMD datasets, generating param.json and machine.json for local or scheduler runs.

jinzhezenggroup/computational-chemistry-agent-skills

Builds interactive Vega-Lite charts from uploaded data: analyzes the fields, picks five to ten fitting chart types, and produces a React artifact with the data embedded inline.

oaustegard/claude-skills

Manages biological datasets with LaminDB: versioned artifacts, run lineage, ontology-based annotation, schema validation and links to workflow managers and ML tools.

davila7/claude-code-templates

Processes tabular datasets too large for RAM with Vaex: lazy DataFrames, fast aggregations, big-data plots and ML pipelines over CSV, HDF5, Arrow and Parquet.

davila7/claude-code-templates

Create, revise, or audit academic data/result figures for CS/AI/ML papers.

joshua-zyy/academic-paper-writer

Patterns for writing production-ready Apache Airflow DAGs: task dependencies, custom operators and sensors, local testing, and rules for what to avoid.

wshobson/agents

Speed up slow Apache Spark jobs by tuning partitions, shuffles, data skew, caching and executor memory, with do and don't rules for PySpark code.

wshobson/agents

A skill your agent uses when the user wants an end-to-end AI4S research pipeline — broad direction or specific topic in, full research package out (exploration + literature survey + experiment +…

ai4s-research/ai4s-skills

Detects CPU, GPU, memory and disk resources before heavy scientific tasks and writes a JSON file with advice on parallelism, out-of-core work and GPU use.

davila7/claude-code-templates

Runs web-page JavaScript without a browser, in a V8 sandbox with a browser-environment shim, for scripts that only probe the environment and compute a result.

taxueseek/argo

Bump the Airflow or Python version across all project files.

godatadriven/whirl

Cleans raw or scraped competition data and produces exploratory charts and a figure plan as one stage of a mathematical modeling paper workflow.

yushui2022/MathModel-Skill

Uses the Deepgram Python SDK's Read API to analyze text for sentiment, summaries, topics and intents with client.read.v1.text.analyze, from raw text or a hosted URL.

deepgram/deepgram-python-sdk

Runs differential gene expression analysis on bulk RNA-seq counts with PyDESeq2: design formulas, Wald tests, FDR correction and volcano or MA plots.

davila7/claude-code-templates

Queries the openFDA API from Python for drug, device, food and veterinary data: adverse events, recalls, labels, approvals, NDC and UNII lookups.

davila7/claude-code-templates

Works with genomic intervals using gtars, a Rust toolkit with Python bindings: overlap detection, coverage tracks, tokenization for ML models and reference sequences.

davila7/claude-code-templates

Processes digital pathology whole slide images with histolab: tissue detection, mask creation, tile extraction and dataset preparation for deep learning.

davila7/claude-code-templates

Processes physiological signals with NeuroKit2 in Python: ECG, PPG, EEG, EDA, respiration, EMG and EOG, including HRV, events and complexity measures.

davila7/claude-code-templates

Builds machine learning pipelines on clinical data with PyHealth: EHR datasets, prediction tasks, medical code mapping, healthcare models and evaluation.

davila7/claude-code-templates

Python interface to OpenMS for mass spectrometry data analysis.

davila7/claude-code-templates

Fits and evaluates survival models with scikit-survival: Cox models, Random Survival Forests, boosting, survival SVMs, concordance index, Brier score and competing risks.

davila7/claude-code-templates

Explains machine learning predictions with SHAP: picking the right explainer, computing Shapley values and drawing waterfall, beeswarm, bar and force plots.

davila7/claude-code-templates

Installing and using common Python packages in SkillBench containers.

A-EVO-Lab/a-evolve

Interactive scientific and statistical data visualization library for Python.

davila7/claude-code-templates

Submission-grade Nature/high-impact journal figure workflow for Python or R.

NeuroAIHub/BrainPilot

Detects Chan theory price structures (fractals, strokes, pivots) and first, second and third buy and sell points from OHLCV bars using the czsc library, in Chinese.

HKUDS/Vibe-Trading

Consolidates BERTopic, LDA or NMF topic output into a theory-driven classification framework and writes the final labels back to an Excel file.

TyrealQ/q-skills

Analyzes CSV, Parquet and JSON data with DuckDB, Polars, numpy and matplotlib, preferring a persistent kernel over repeated one-shot processes.

code-yeongyu/oh-my-openagent

PGA Tour, LPGA, and DP World Tour golf data via ESPN public endpoints — tournament leaderboards, scorecards, season schedules, golfer profiles/overviews, and news.

machina-sports/sports-skills

Handles vector geospatial data in Python with GeoPandas: reading shapefiles, GeoJSON and GeoPackage, reprojecting, spatial joins, overlays, clipping and maps.

davila7/claude-code-templates

Remote control tmux sessions for interactive CLIs (python, gdb, etc.) by sending keystrokes and scraping pane output.

mitsuhiko/agent-stuff

生成研究/项目架构图、流程图、层次图（swimlane / processflow / hierarchytree）。适合 PPT 汇报、技术文档、综述插图。输出风格接近 draw.io，可选 graphviz（高质量）/ matplotlib（零依赖）双后端。

csmar432/finai-research

Publish a Python package to PyPI using uv with credentials loaded from a local .secrets file.

ML4ITS/TimeVQVAE

Guide for using OptimusKG, the biomedical knowledge graph, through the optimuskg Python client.

mims-harvard/OptimusKG

Turns raw flux balance analysis output and a COBRApy model into gene essentiality maps, phenotypic phase planes, flux sampling results, pathway summaries and secretion predictions.

aiming-lab/AutoResearchClaw

Guide for contributing to the verified-sources repository. An agent skill from dlt-hub/verified-sources.

dlt-hub/verified-sources

Use dspy.RLM (Recursive Language Model) for reasoning over contexts too large to fit in an LLM's working window — entire codebases, long logs, massive documents, or multi-step data exploration that…

intertwine/dspy-agent-skills

Generates production-ready analysis code in Python, R, SQL. An agent skill from liangdabiao/claude-data-analysis-ultra-main.

liangdabiao/claude-data-analysis-ultra-main

Plugin shim for the mathmodel-skill competition workflow. An agent skill from handsomeZR-netizen/mathmodel-skill.

handsomeZR-netizen/mathmodel-skill

Runs read-only MongoDB finds, aggregations and collection listings against databases named in your .env, choosing the connection by label or index.

evolution-foundation/evo-nexus

Tracks ML experiments, versions models in the MLflow registry and covers deployment and reproducibility, with autologging for common frameworks.

Orchestra-Research/AI-Research-SKILLs

Detects Elliott Wave structures in price data with a Zigzag swing finder and Fibonacci checks, and turns completed waves into long, short or flat signals.

HKUDS/Vibe-Trading

Microscopy data management platform. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Audit and improve datafusion-python functions to accept native Python types (int, float, str, bool) instead of requiring explicit lit() or col() wrapping.

apache/datafusion-python

Load when correcting batch effects in bulk expression using R sva ComBat or the legacy Python parametric approximation.

TianGzlab/OmicsClaw

3Dmol.js WebGL molecular visualization emitted as self-contained HTML.

jaechang-hits/SciAgent-Skills

Evaluate LLM model quality using BERTScore, ROUGE, Perplexity, and Text Readability metrics on OCI AI Quick Actions (AQUA).

oracle/accelerated-data-science

Run Python code in the cloud with serverless containers, GPUs, and autoscaling.

davila7/claude-code-templates