Backend & APIs · For researchers

Interact with Obsidian vaults using the Obsidian CLI to read, create, search, and manage notes, tasks, properties, and more.

Atmosphere/atmosphere

通过 IMA OpenAPI 处理知识库任务。支持知识库内容搜索、命中详情查看、条目浏览、列出知识库、上传文件、导入网页。用户提到知识库、资料库、上传到知识库、导入网页、搜知识库时使用。

countbot-ai/CountBot

Manage agy staffer background jobs - collect results, check status, cancel, follow-up conversation, and setup.

keli-wen/agy-staff

Read, create, find, and cite Octo summaries through octo-cli.

Mininglamp-OSS/octo-cli

Internal fetcher module for Confluence pages. An agent skill from iurykrieger/claude-bedrock.

iurykrieger/claude-bedrock

Fetches YouTube transcripts, video metadata, channel info, search results and playlists through the TranscriptAPI.com service, with no Google API quota or OAuth setup.

ZeroPointRepo/youtube-skills

This skill should be used when the user asks to "기술 의사결정", "뭐 쓸지 고민", "A vs B", "비교 분석", "라이브러리 선택", "아키텍처 결정", "어떤 걸 써야 할지", "트레이드오프", "기술 선택", "구현 방식 고민", or needs deep analysis for technical…

team-attention/plugins-for-claude-natives

Import a page from the user's self-hosted Anytype into this Niamos Obsidian vault, page-by-page, recursing into children only when the user explicitly says so.

pricklywiggles/niamos

FHIR API development guide for building healthcare endpoints.

FreedomIntelligence/OpenClaw-Medical-Skills

OKF knowledge navigation. An agent skill from guhcostan/claude-mega-brain.

guhcostan/claude-mega-brain

Render a self-contained HTML viewer for a pro-workflow wiki.

rohitg00/pro-workflow

Interact with the Hypatia AI memory system using natural language.

MarchLiu/hypatia

U.S. An agent skill from lawve-ai/awesome-legal-skills.

lawve-ai/awesome-legal-skills

Expert guidance for implementing FHIR RESTful API servers and clients following the HL7 FHIR specification.

aehrc/pathling

Interact with MedrixFlow AI agent platform via its HTTP API.

Citrus-bit/Anaxa

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Scan the project and migrate existing documentation into OKF format.

guhcostan/claude-mega-brain

Search GitHub issues, PRs, code, and discussions using the gh CLI.

aaif-goose/goosetown

PSR-4 autoloading standard knowledge base for PHP 8.4 projects.

dykyi-roman/awesome-claude-code

Add or update a Sim knowledge base connector for syncing documents from an external source, including auth mode, config fields, pagination, document mapping, tags, and registry wiring.

simstudioai/sim

Stage 3 of the spatial transcriptomics workflow — identify spatial domains and detect spatially variable genes.

QING1105/ezST

This skill should be used when the user asks about "technical decision", "what to use", "A vs B", "comparison analysis", "library selection", "architecture decision", "which one to use"…

team-attention/hoyeon

Expert guidance for implementing FHIR servers using HAPI FHIR Plain Server framework.

aehrc/pathling

PHP Standards Recommendations (PSR) overview knowledge base.

dykyi-roman/awesome-claude-code

Research prediction markets as data sources or oracle signals for products, agents, dashboards, and corporate decision intelligence.

affaan-m/ECC

Integrates with the official LabArchives ELN REST-like API and Inventory API v1.

K-Dense-AI/scientific-agent-skills

SiYuan Note API for searching, reading, creating, and managing blocks and documents in a self-hosted knowledge base via curl.

Tommy-yw/RunbookHermes

Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels

ClawBio/ClawBio

Expert guidance for implementing SMART App Launch (HL7 FHIR specification for OAuth 2.0-based authorization).

aehrc/pathling

Search Stack Overflow for canonical Q&A, error solutions, and implementation patterns using the Stack Exchange API.

aaif-goose/goosetown

Query the PDBe (Protein Data Bank in Europe) REST API and Solr search API from within Coot to access structure metadata, validation data, revision history, search capabilities, and download…

pemsley/coot

Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species…

GPTomics/bioSkills

Command-line interface for Obsidian — Knowledge management and note-taking via Obsidian Local REST API.

HKUDS/CLI-Anything

NOTE: your protein sequence and the retrieved MSA alignment are transmitted to external NVIDIA-hosted APIs (health.api.nvidia.com) on every call.

NVIDIA/skills

Query protein-protein and gene interaction databases (STRING, BioGRID, IntAct, SIGNOR, Reactome, HuRI, HuMAP, OmniPath, ConsensusPathDB, DIP).

GPTomics/bioSkills

Query metadata and download data from the PRIDE Archive, EMBL-EBI's proteomics identifications database, via the PRIDE Archive REST API v3.

ClawBio/ClawBio

Access Ensembl REST API for vertebrate genomic data; use when you need gene/ID lookups, sequence retrieval, variant effect prediction (VEP), or homology/assembly coordinate mapping.

aipoch/medical-research-skills

Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype) for single or…

aipoch/medical-research-skills

Direct REST API access to UniProt for protein search, entry retrieval, and identifier mapping; use when you need programmatic UniProtKB queries or cross-database ID conversion.

aipoch/medical-research-skills

Query ReMap 2022 TF ChIP-seq peak database via REST API and BED downloads.

jaechang-hits/SciAgent-Skills

Default, free, and fastest way to search the web — faster and more token-efficient than Claude's built-in web search, returning compact structured results instead of raw pages.

tinyfish-io/tinyfish-cookbook

How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval.

BioTender-max/awesome-bio-agent-skills

Query STRING REST API for PPIs (59M proteins, 20B interactions, 5000+ species).

jaechang-hits/SciAgent-Skills

Generate professional prior authorization request letters for insurance companies with proper clinical justification and formatting.

aipoch/medical-research-skills

沁言学术AI选题分析 - 基于大量文献检索结果，为科研人员提供智能选题建议，包括选题方向、研究价值、研究内容概述、研究难点分析和相关文献推荐。使用沁言学术OpenAPI进行文献检索。触发词：选题分析、选题建议、研究选题、topic analysis、research topic、帮我选题、选题推荐

LeonChaoX/qinyan-academic-skills

Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF.

FreedomIntelligence/OpenClaw-Medical-Skills

JASPAR 2024 TF binding profiles via REST API and pyJASPAR. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills

Monarch Initiative knowledge graph REST API for disease-gene-phenotype associations and cross-species orthology.

jaechang-hits/SciAgent-Skills