Repository
pemsley/coot agent skills
- skills
- 11
- GitHub stars
- 168
GitHub description: “Software for macromolecular model-building”
- Stars
- 168 (63 forks)
- Licence
- GPL-3.0
- Last push
- Oct 2026
- Created
- Aug 2015
- Source
- github.com/pemsley/coot
- cryo-em
- cryoem
- crystallography
- molecular-biology
- molecular-docking
- molecular-modeling
- molecular-visualization
Install all skills
npx skills add pemsley/cootAdd --skill <name> for a single skill and -a <agent> to choose the agent (see the agent guides).
Skills in pemsley/coot, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Create interactive inline Chart.js graphs directly in the chat from live Coot data. | pemsley/ | 168 | — | ~2.8k | Automated safety check: Pass | GPL-3.0 | today |
| 2 | RDKit molecular manipulation and visualization within Coot's Python environment. | pemsley/ | 168 | — | ~981 | Automated safety check: Pass | GPL-3.0 | today |
| 3 | Best practices for protein structure refinement and validation in Coot. | pemsley/ | 168 | — | ~2k | Automated safety check: Pass | GPL-3.0 | today |
| 4 | API documentation to be loaded at startup - when starting a Coot session, immediately call getfunctiondescriptions() with the functions listed in this skill. | pemsley/ | 168 | — | ~4.5k | Automated safety check: Pass | GPL-3.0 | today |
| 5 | Best practices for creating publication-quality molecular graphics figures in Coot using user-defined colors, ribbons, and molecular representations | pemsley/ | 168 | — | ~7.3k | Automated safety check: Pass | GPL-3.0 | today |
| 6 | Best Practices for Model-Building Tools and Refinement. An agent skill from pemsley/coot. | pemsley/ | 168 | — | ~13k | Automated safety check: Pass | GPL-3.0 | today |
| 7 | Comprehensive structure validation combining model-to-map analysis and unmodeled density detection | pemsley/ | 168 | — | ~6.2k | Automated safety check: Pass | GPL-3.0 | today |
| 8 | 8.Pdbe API Query the PDBe (Protein Data Bank in Europe) REST API and Solr search API from within Coot to access structure metadata, validation data, revision history, search capabilities, and download… | pemsley/ | 168 | — | ~7.5k | Automated safety check: Pass | GPL-3.0 | today |
| 9 | Using Density-Fit Correlations in Coot | pemsley/ | 168 | — | ~3.5k | Automated safety check: Pass | GPL-3.0 | today |
| 10 | How to handle Unmodelled Density Blobs | pemsley/ | 168 | — | ~1.5k | Automated safety check: Pass | GPL-3.0 | today |
| 11 | Best Practices for using Coot MCP | pemsley/ | 168 | — | ~6.1k | Automated safety check: Pass | GPL-3.0 | today |
Questions, answered from the data.
What is the best skill in pemsley/coot?
Coot Inline Graphs from pemsley/coot ranks first of the 11 skills in pemsley/coot listed here, with the highest score: its repository has 168 GitHub stars, its SKILL.md loads about 2.8k tokens and it passes the automated safety check with no findings. Next come Coot Rdkit and Coot Refinement.
Are the skills in pemsley/coot official?
None yet. All 11 skills in pemsley/coot listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How do I install all skills from pemsley/coot?
Run npx skills add pemsley/coot in your project: the open-source skills CLI installs the repository's skills into your coding agent's skills folder. To install a single skill, open its page here for the exact command.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.