Best research and science skills, page 16

Verify citations, claims, and numbers before answering. An agent skill from serenakeyitan/open-exam-skills.

serenakeyitan/open-exam-skills

Runs differential gene expression analysis on bulk RNA-seq counts with PyDESeq2: design formulas, Wald tests, FDR correction and volcano or MA plots.

davila7/claude-code-templates

Query ChEMBL's bioactive molecules and drug discovery data. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Quantum computing framework for building, simulating, optimizing, and executing quantum circuits.

davila7/claude-code-templates

Guides your agent through building, editing, comparing and drawing phylogenetic trees with the ETE Python toolkit, including orthology calls and NCBI taxonomy lookups.

davila7/claude-code-templates

Queries the openFDA API from Python for drug, device, food and veterinary data: adverse events, recalls, labels, approvals, NDC and UNII lookups.

davila7/claude-code-templates

Works with genomic intervals using gtars, a Rust toolkit with Python bindings: overlap detection, coverage tracks, tokenization for ML models and reference sequences.

davila7/claude-code-templates

Processes digital pathology whole slide images with histolab: tissue detection, mask creation, tile extraction and dataset preparation for deep learning.

davila7/claude-code-templates

Screens compound libraries in Python with the medchem library: drug-likeness rules, PAINS filters, structural alerts and complexity metrics for prioritizing molecules.

davila7/claude-code-templates

Processes physiological signals with NeuroKit2 in Python: ECG, PPG, EEG, EDA, respiration, EMG and EOG, including HRV, events and complexity measures.

davila7/claude-code-templates

Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data.

davila7/claude-code-templates

Builds machine learning pipelines on clinical data with PyHealth: EHR datasets, prediction tasks, medical code mapping, healthcare models and evaluation.

davila7/claude-code-templates

Python interface to OpenMS for mass spectrometry data analysis.

davila7/claude-code-templates

Fits and evaluates survival models with scikit-survival: Cox models, Random Survival Forests, boosting, survival SVMs, concordance index, Brier score and competing risks.

davila7/claude-code-templates

This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling…

davila7/claude-code-templates

This skill should be used when working with genomic interval data (BED files) for machine learning tasks.

davila7/claude-code-templates

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities.

davila7/claude-code-templates

Searches USPTO patent and trademark data through its APIs: patent search, PEDS examination history, assignments, citations, office actions and TSDR status.

davila7/claude-code-templates

Visium HD platform branch of the spatial transcriptomics workflow — reconstruct single cells from 2 μm bins via morphological segmentation and bin-to-cell aggregation.

QING1105/ezST

Drives an end-to-end workflow for the CUMCM math modeling contest: reads the problem and data, researches, codes and verifies models, then writes a LaTeX paper and PDF.

RealSeaberry/AutoMCM-Pro

Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML).

LeonChaoX/qinyan-academic-skills

Independently review a CUMCM computation package before its claims enter validation or paper writing.

Lucasuiii/modeling-workbench

Soft- or hard-clips PCR primer footprints from aligned amplicon BAMs so primer bases stop masquerading as confirmed reference sequence.

GPTomics/bioSkills

Pipeline stage that turns a mathematical modeling report into runnable programs per sub-question, frozen numerical results and reviewable evidence files.

WuXinbo-bo/Math-model-skills

A skill your agent uses when Codex needs to convert selected exemplar trajectories into a sentence-level PaperPRISM ClozeBlueprint before paper writing, or revise an existing…

XueruiSu/Paper-PRISM

Constructs honest, checkable derivation chains for formulas and theory notes, and keeps approximations and numerical hints from passing as rigorous proof.

tradecatlabs/vibe-coding-cn

Rigor Intake helper for README-first deep learning repo reproduction.

lllllllama/RigorPilot-Skills

Stress-test an academic research question, proposal, study design, analysis plan, manuscript claim, review protocol, or AI research project through a one-question-at-a-time interview until its…

Exekiel179/psyclaw

You MUST use this before any data analysis or investigation - before exploring a dataset, loading or profiling data, running a model, computing a statistic, or testing an idea, and before any…

K-Dense-AI/science-superpowers

Citation-integrity forensics: is every reference real, correctly attributed, and used in a context the cited work actually supports?

wanshuiyin/Anti-Autoresearch

Pipeline stage that draws non-data diagrams for a mathematical modeling paper in DrawIO and exports them as PDFs, in Chinese.

jihe520/MathModelAgent

Portable multi-source research with cross-source validation and an offline evidence ledger.

sandbaseai/sandbase-skills

Validates and registers new SoT IDs with cross-reference integrity.

mattgierhart/PRD-driven-context-engineering

Compose one publication-grade multi-panel figure. An agent skill from aipoch/open-science.

aipoch/open-science

Build high-quality literature reviews from a research topic using a 10-phase workflow.

Drchronx/ai-agent-research-starter-kit

When you want multiple expert perspectives on a founder/operator question — a simulated board of advisors (Jason Fried, Elon Musk, Jeff Bezos, Jensen Huang, Bob Iger, Paul Graham, Naval Ravikant…

coreyhaines31/makerskills

科研论文解读：解析 arXiv/PDF 的公式与图表，提炼问题、贡献、方法、关键图和结论，再产出 B站/视频号解读视频或知乎/公众号图文。

ZJU-REAL/Easel

A skill your agent uses when the user's prompt requires (1) researching a topic across multiple sources, comparing options or alternatives, analyzing trends or history, understanding markets or…

asgeirtj/system_prompts_leaks

Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles.

zLanqing/codex-claude-academic-skills

Systematically discover and shortlist academic literature for a research project.

scholay/skills

Runs a seven-step quality-control and exploration pipeline on scRNA-seq, CyTOF or flow cytometry data and writes a plain-language report of what it found.

LigphiDonk/Oh-my--paper

Validate bibliography entries against citations in all manuscript files.

maxwell2732/my-submission-formatting-agent

Scaffold a new MCP prompt template. An agent skill from cyanheads/pubmed-mcp-server.

cyanheads/pubmed-mcp-server

Critically review, score, compare, and rank one or more AI scientist outputs for biology, bioinformatics, computational life science, or adjacent research tasks.

BioTender-max/awesome-bio-agent-skills

A skill your agent uses when working on bioinformatics workflows such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially across BLAST, minimap2, samtools…

ZimoLiao/scholaraio

Consolidates BERTopic, LDA or NMF topic output into a theory-driven classification framework and writes the final labels back to an Excel file.

TyrealQ/q-skills

Best practices for protein structure refinement and validation in Coot.

pemsley/coot