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Agent skills by jaechang-hits, page 2
Skills by jaechang-hits, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 49 | Retrieve mouse phenotype data from the Jackson Laboratory Mouse Phenome Database (MPD) via its REST API. | jaechang-hits/ | 371 | 1 repo | ~6.8k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 50 | Medical image segmentation with nnU-Net's self-configuring framework — auto-selects architecture, preprocessing, training for any modality. | jaechang-hits/ | 371 | 1 repo | ~6.8k | Automated safety check: Pass | Apache-2.0 | 10 days ago |
| 51 | Interactive scientific visualization with Plotly. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~8.2k | Automated safety check: Pass | MIT | 10 days ago |
| 52 | Query EBI QuickGO REST API for GO terms and protein annotations. | jaechang-hits/ | 371 | 1 repo | ~6.9k | Automated safety check: Pass | Apache-2.0 | 10 days ago |
| 53 | Query RegulomeDB v2 GET REST API to score variants for regulatory function and retrieve overlapping evidence (TF binding, histone marks, DNase peaks, footprints, motifs, eQTLs, chromatin state). | jaechang-hits/ | 371 | 1 repo | ~5.3k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 54 | Systematic strategies for searching scientific literature across PubMed, arXiv, Google Scholar, and AI-assisted tools. | jaechang-hits/ | 371 | 1 repo | ~5.7k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 55 | Register, segment, filter, resample 3D medical images (MRI, CT, microscopy) via SimpleITK Python; DICOM, NIfTI, multi-modal. | jaechang-hits/ | 371 | 1 repo | ~9.2k | Automated safety check: Pass | Apache-2.0 | 10 days ago |
| 56 | Python library for single-particle tracking (SPT) in video microscopy via the Crocker-Grier algorithm. | jaechang-hits/ | 371 | 1 repo | ~6.6k | Automated safety check: Pass | BSD-3-Clause | 10 days ago |
| 57 | Query UCSC Genome Browser REST API for DNA sequences, tracks, gene models, and conservation across 100+ assemblies. | jaechang-hits/ | 371 | 1 repo | ~6k | Automated safety check: Pass | Apache-2.0 | 10 days ago |
| 58 | Predict RNA secondary structure, MFE folding, base-pair probabilities, RNA-RNA interactions via ViennaRNA Python bindings. | jaechang-hits/ | 371 | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 10 days ago |
| 59 | 59.Adaptyv Bio API + Python SDK for ordering cell-free protein expression and binding assays. | jaechang-hits/ | 371 | 1 repo | ~4.7k | Automated safety check: Pass | MIT | 10 days ago |
| 60 | Core Python library for astronomy/astrophysics: units with dimensional analysis, celestial coordinate transforms (ICRS/Galactic/AltAz/FK5), FITS I/O, tables (FITS/HDF5/VOTable/CSV), cosmology… | jaechang-hits/ | 371 | 1 repo | ~5.5k | Automated safety check: Pass | BSD-3-Clause | 10 days ago |
| 61 | CLI for VCF/BCF: filter, merge, annotate, query, normalize, compute stats. | jaechang-hits/ | 371 | 1 repo | ~4.8k | Automated safety check: Pass | MIT | 10 days ago |
| 62 | Genomic interval ops on BED/BAM/GFF/VCF. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~4.3k | Automated safety check: Pass | GPL-2.0 | 10 days ago |
| 63 | Query bioRxiv/medRxiv preprints via REST API. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~5.1k | Automated safety check: Pass | CC0-1.0 | 10 days ago |
| 64 | Unified Python interface to 40+ bioinformatics web services: UniProt proteins, KEGG pathways, ChEMBL/ChEBI/PubChem, BLAST, cross-database ID mapping, GO annotations, PPI. | jaechang-hits/ | 371 | 1 repo | ~6.1k | Automated safety check: Pass | Unknown | 10 days ago |
| 65 | BRENDA Enzyme DB SOAP/REST queries: kinetic parameters (Km, Vmax, kcat, Ki), EC classes, substrate specificity, inhibitors, cofactors, organism data. | jaechang-hits/ | 371 | 1 repo | ~4.6k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 66 | Fast short-read DNA aligner for WGS/WES/ChIP-seq. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~3.5k | Automated safety check: Pass | MIT | 10 days ago |
| 67 | Cancer Research (AACR) figures: resolution (300-1200 DPI), formats (EPS/TIFF/AI), hierarchical panel labels (Ai, Aii, Bi), figure/table limits, legend requirements with replicate counts. | jaechang-hits/ | 371 | 1 repo | ~2.8k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 68 | Cell (Cell Press) figure preparation: resolution (300-1000 DPI), formats (TIFF/PDF), RGB color, Avenir/Arial fonts, uppercase panel labels, strict image manipulation policies. | jaechang-hits/ | 371 | 1 repo | ~3.6k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 69 | DL cell/nucleus segmentation for fluorescence and brightfield microscopy. | jaechang-hits/ | 371 | 1 repo | ~3.5k | Automated safety check: Pass | BSD-3-Clause | 10 days ago |
| 70 | Query ClinicalTrials.gov API v2 for trial data. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~4.6k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 71 | Query NCBI ClinVar via E-utilities for variant clinical significance, pathogenicity, disease associations. | jaechang-hits/ | 371 | 1 repo | ~4.9k | Automated safety check: Pass | CC0-1.0 | 10 days ago |
| 72 | Query COSMIC for cancer somatic mutations, gene census, mutational signatures, drug resistance variants. | jaechang-hits/ | 371 | 1 repo | ~4.6k | Automated safety check: Pass | CC-BY-NC-SA-4.0 | 10 days ago |
| 73 | Pythonic RDKit wrapper with sensible defaults for drug discovery. | jaechang-hits/ | 371 | 1 repo | ~4.4k | Automated safety check: Pass | Apache-2.0 | 10 days ago |
| 74 | NGS CLI for ChIP/RNA/ATAC-seq. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~4.1k | Automated safety check: Pass | BSD-3-Clause | 10 days ago |
| 75 | Filter degenerate, uninformative inputs before statistical tests: single-sequence alignments, empty files, constant features, zero-variance inputs, all-NaN columns. | jaechang-hits/ | 371 | 1 repo | ~3.7k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 76 | DepMap CRISPR gene effect (Chronos) analysis: sign convention for essentiality, per-gene NaN-safe Spearman correlation, data loading/alignment. | jaechang-hits/ | 371 | 1 repo | ~3.7k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 77 | Parse local DrugBank XML for drug info, interactions, targets, and properties. | jaechang-hits/ | 371 | 1 repo | ~5.8k | Automated safety check: Pass | Unknown | 10 days ago |
| 78 | Look up EMDB cryo-EM density maps and fitted atomic models via the entry REST API + EBI Search WS. | jaechang-hits/ | 371 | 1 repo | ~4.9k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 79 | Ensembl REST API for gene/transcript/variant annotations in 300+ species. | jaechang-hits/ | 371 | 1 repo | ~4k | Automated safety check: Pass | Apache-2.0 | 10 days ago |
| 80 | Protein language models (ESM3, ESM C) for sequence generation, structure prediction, inverse folding, and embeddings. | jaechang-hits/ | 371 | 1 repo | ~4k | Automated safety check: Pass | MIT | 10 days ago |
| 81 | All-in-one FASTQ QC and adapter trimming. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~4.1k | Automated safety check: Pass | MIT | 10 days ago |
| 82 | 82.Fda Database Query openFDA REST API for adverse events (FAERS), labeling, product info, recalls, enforcement. | jaechang-hits/ | 371 | 1 repo | ~4.5k | Automated safety check: Pass | CC0-1.0 | 10 days ago |
| 83 | Counts RNA-seq reads overlapping GTF gene features. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~3.7k | Automated safety check: Notes | GPL-3.0 | 10 days ago |
| 84 | Parse/write FCS (Flow Cytometry) files v2.0-3.1. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~3k | Automated safety check: Pass | BSD-3-Clause | 10 days ago |
| 85 | GATK Best Practices for germline SNP/indel calling from WGS/WES BAMs. | jaechang-hits/ | 371 | 1 repo | ~3.7k | Automated safety check: Pass | BSD-3-Clause | 10 days ago |
| 86 | Universal QA checklist for generated scientific plots: overlapping labels, clipped text, missing axes/legends, overcrowded data, and cross-journal resolution/format guidance. | jaechang-hits/ | 371 | 1 repo | ~1.8k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 87 | GSEA and over-representation analysis (ORA) for RNA-seq and proteomics. | jaechang-hits/ | 371 | 1 repo | ~4.1k | Automated safety check: Pass | MIT | 10 days ago |
| 88 | Query IUPHAR/BPS Guide to Pharmacology (GtoPdb) for receptor-ligand interactions, target/ligand metadata, families, and approved drugs. | jaechang-hits/ | 371 | 1 repo | ~4.9k | Automated safety check: Pass | Unknown | 10 days ago |
| 89 | NHGRI-EBI GWAS Catalog REST API for SNP-trait associations from published GWAS. | jaechang-hits/ | 371 | 1 repo | ~6.6k | Automated safety check: Pass | Apache-2.0 | 10 days ago |
| 90 | WSI processing for digital pathology. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~5.8k | Automated safety check: Notes | Apache-2.0 | 10 days ago |
| 91 | LLM-driven hypothesis generation/testing on tabular data. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~3.9k | Automated safety check: Pass | MIT | 10 days ago |
| 92 | KEGG REST API (academic only). An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~4.6k | Automated safety check: Pass | Unknown | 10 days ago |
| 93 | Guide to KEGG pathway enrichment for DEG results. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~4.8k | Automated safety check: Pass | CC-BY-4.0 | 10 days ago |
| 94 | Poisson-model peak caller for ChIP-seq/ATAC-seq BAMs. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~3.5k | Automated safety check: Pass | BSD-3-Clause | 10 days ago |
| 95 | MS spectral matching and metabolite ID with matchms. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 371 | 1 repo | ~6.3k | Automated safety check: Pass | Apache-2.0 | 10 days ago |
| 96 | Low-level Python plotting for scientific figures: publication-quality line, scatter, bar, heatmap, contour, 3D; multi-panel layouts; fine control of every element. | jaechang-hits/ | 371 | 1 repo | ~4k | Automated safety check: Pass | Unknown | 10 days ago |
