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Agent skills by jaechang-hits, page 3

Skills #97–144 of 169, ranked by score.

Skills by jaechang-hits, ranked

Ranked by score. Sort bymost stars,trending,newest,recently updated

Skills by jaechang-hits, ranked
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97
97.Multiqc Qc Reports

Aggregates QC from 150+ bioinformatics tools into one interactive HTML report.

jaechang-hits/SciAgent-Skills3711 repo~2.9kAutomated safety check: PassGPL-3.011 days ago
98
98.Nan Safe Correlation

Per-feature NaN-safe Spearman/Pearson correlation across many features (genes, proteins, variants) with missing values.

jaechang-hits/SciAgent-Skills3711 repo~2.9kAutomated safety check: PassCC-BY-4.011 days ago
99
99.Napari Image Viewer

Interactive viewer for microscopy. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~3.3kAutomated safety check: PassBSD-3-Clause11 days ago
100
100.Networkx Graph Analysis

Graph and network analysis toolkit. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~5.8kAutomated safety check: PassBSD-3-Clause11 days ago
101
101.Openalex Database

Query OpenAlex REST API for 250M+ scholarly works, authors, institutions, journals, concepts.

jaechang-hits/SciAgent-Skills3711 repo~4.8kAutomated safety check: PassCC0-1.011 days ago
102
102.Opencv Bioimage Analysis

Computer vision for bio-image preprocessing, feature detection, real-time microscopy.

jaechang-hits/SciAgent-Skills3711 repo~3.9kAutomated safety check: PassApache-2.011 days ago
103
103.Peer Review Methodology

Structured peer review of manuscripts and grants. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~2.9kAutomated safety check: PassCC-BY-4.011 days ago
104
104.Plink2 Gwas Analysis

GWAS and population genetics tool. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~3.5kAutomated safety check: PassGPL-3.011 days ago
105
105.Plotly Interactive Visualization

Interactive visualization with Plotly. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~4.5kAutomated safety check: PassMIT11 days ago
106
106.Protocolsio Integration

protocols.io REST API: search and fetch wet-lab, bioinformatics, and clinical protocols by keyword, DOI, or category, with steps, reagents, materials, equipment, timing.

jaechang-hits/SciAgent-Skills3711 repo~4.3kAutomated safety check: PassCC-BY-4.011 days ago
107
107.Pydicom Medical Imaging

Pure Python DICOM for medical imaging (CT, MRI, X-ray, ultrasound).

jaechang-hits/SciAgent-Skills3711 repo~7.5kAutomated safety check: PassMIT11 days ago
108
108.Pylabrobot

Hardware-agnostic Python liquid-handler library: portable scripts run on Hamilton STAR, Tecan Freedom EVO, Opentrons OT-2, or a simulator without vendor lock-in.

jaechang-hits/SciAgent-Skills3711 repo~4kAutomated safety check: PassMIT11 days ago
109
109.Pymc Bayesian Modeling

Bayesian modeling with PyMC 5: priors, likelihood, NUTS/ADVI sampling, diagnostics (R-hat, ESS), LOO/WAIC comparison, prediction.

jaechang-hits/SciAgent-Skills3711 repo~5.7kAutomated safety check: PassApache-2.011 days ago
110
110.Pymoo

Python framework for single- and multi-objective optimization with evolutionary algorithms.

jaechang-hits/SciAgent-Skills3711 repo~4.9kAutomated safety check: PassApache-2.011 days ago
111
111.Pyopenms Mass Spectrometry

MS data processing with PyOpenMS for LC-MS/MS proteomics and metabolomics — mzML/mzXML I/O, signal processing (smoothing, peak picking, centroiding), feature detection/linking, peptide/protein ID…

jaechang-hits/SciAgent-Skills3711 repo~5.9kAutomated safety check: PassBSD-3-Clause11 days ago
112
112.Salmon Rna Quantification

Ultra-fast RNA-seq transcript/gene quantification via quasi-mapping (no BAM).

jaechang-hits/SciAgent-Skills3711 repo~4kAutomated safety check: PassGPL-3.011 days ago
113
113.Samtools Bam Processing

CLI toolkit for SAM/BAM/CRAM: sort, index, convert, filter, QC alignments.

jaechang-hits/SciAgent-Skills3711 repo~4.1kAutomated safety check: PassMIT11 days ago
114
114.Scikit Image Processing

Python image processing for microscopy and bioimage analysis.

jaechang-hits/SciAgent-Skills3711 repo~4.4kAutomated safety check: PassBSD-3-Clause11 days ago
115
115.Scikit Learn Machine Learning

Classical ML in Python: classification, regression, clustering, dim reduction, evaluation, tuning, preprocessing pipelines.

jaechang-hits/SciAgent-Skills3711 repo~4kAutomated safety check: PassBSD-3-Clause11 days ago
116
116.Scikit Survival Analysis

Time-to-event modeling with scikit-survival: Cox PH (elastic net), Random Survival Forests, Boosting, SVMs for censored data.

jaechang-hits/SciAgent-Skills3711 repo~6.9kAutomated safety check: PassGPL-3.011 days ago
117
117.Simpy Discrete Event Simulation

Process-based discrete-event simulation. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~5.4kAutomated safety check: PassMIT11 days ago
118
118.Star Rna Seq Aligner

Splice-aware RNA-seq aligner producing sorted BAM and splice junction tables.

jaechang-hits/SciAgent-Skills3711 repo~4.1kAutomated safety check: PassMIT11 days ago
119
119.Torch Geometric Graph Neural Networks

PyTorch Geometric (PyG) for graph neural networks: node/graph classification, link prediction with GCN, GAT, GraphSAGE, GIN.

jaechang-hits/SciAgent-Skills3711 repo~5.1kAutomated safety check: PassMIT11 days ago
120
120.Transformers Bio NLP

HuggingFace Transformers with biomedical LMs (BioBERT, PubMedBERT, BioGPT, BioMedLM) for scientific NLP: NER (genes, diseases, chemicals), relation extraction, QA, text classification, abstract…

jaechang-hits/SciAgent-Skills3711 repo~4.9kAutomated safety check: PassApache-2.011 days ago
121
121.Uniprot Protein Database

Query UniProt REST API: search by gene/protein name, fetch FASTA, map IDs (Ensembl, PDB, RefSeq), access Swiss-Prot annotations.

jaechang-hits/SciAgent-Skills3711 repo~3.4kAutomated safety check: PassCC-BY-4.011 days ago
122
122.Uspto Database

Access USPTO patent data via PatentsView REST API and Google Patents Public Data (BigQuery).

jaechang-hits/SciAgent-Skills3711 repo~4.6kAutomated safety check: PassCC0-1.011 days ago
123
123.Vcf Variant Filtering

Guide to quality filtering raw VCF files before computing summary stats (Ts/Tv ratio, variant counts, AF distributions).

jaechang-hits/SciAgent-Skills3711 repo~4.8kAutomated safety check: PassCC-BY-4.011 days ago
124
124.Statsmodels Statistical Modeling

Python statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests.

jaechang-hits/SciAgent-Skills3711 repo~4.2kAutomated safety check: PassBSD-3-Clause11 days ago
125
125.Archs4 Database

Query ARCHS4 REST API for uniformly processed RNA-seq expression, tissue patterns, co-expression across 1M+ human/mouse samples.

jaechang-hits/SciAgent-Skills3711 repo~6.6kAutomated safety check: PassCC-BY-4.011 days ago
126
126.Bakta Genome Annotation

Annotate bacterial and archaeal genomes and plasmids with Bakta's Prodigal/HMM/diamond pipeline.

jaechang-hits/SciAgent-Skills3711 repo~5.9kAutomated safety check: PassGPL-3.011 days ago
127
127.Chembl Database Bioactivity

Query ChEMBL (2M+ compounds, 19M+ bioactivity measurements, 13K+ targets) via the public REST/JSON API with plain requests — no SDK install required.

jaechang-hits/SciAgent-Skills3711 repo~6.4kAutomated safety check: PassCC-BY-SA-4.011 days ago
128
128.Clinpgx Database

Query the ClinPGx (formerly PharmGKB) REST API plus the CPIC PostgREST companion API for pharmacogenomic clinical annotations, CPIC/DPWG dosing guidelines, gene-drug pairs, variant-drug…

jaechang-hits/SciAgent-Skills3711 repo~7.2kAutomated safety check: PassCC-BY-SA-4.011 days ago
129
129.Cnvkit Copy Number

Detect somatic CNVs from WES/WGS/targeted BAMs (CNVkit v0.9.x).

jaechang-hits/SciAgent-Skills3711 repo~5.9kAutomated safety check: PassApache-2.011 days ago
130
130.Dailymed Database

Query FDA drug labels (DailyMed) via REST API. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~6kAutomated safety check: PassCC0-1.011 days ago
131
131.Dbsnp Database

Query NCBI dbSNP for SNP records by rsID, gene, or region via E-utilities and Variation Services REST API.

jaechang-hits/SciAgent-Skills3711 repo~7.3kAutomated safety check: PassCC0-1.011 days ago
132
132.Ddinter Database

Query DDInter drug-drug interactions via REST API (1.7M+ interactions, 2,400+ drugs).

jaechang-hits/SciAgent-Skills3711 repo~7.3kAutomated safety check: PassCC-BY-4.011 days ago
133
133.Deseq2 Differential Expression

Bulk RNA-seq DE with R/Bioconductor DESeq2. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~6.4kAutomated safety check: PassLGPL-3.011 days ago
134
134.Ena Database

ENA REST API for sequences, reads, assemblies, and annotations.

jaechang-hits/SciAgent-Skills3711 repo~5.3kAutomated safety check: PassUnknown11 days ago
135
135.Gnomad Database

gnomAD v4 population variant frequencies via GraphQL API. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3711 repo~7.2kAutomated safety check: PassUnknown11 days ago
136
136.Hmdb Database

Parse HMDB (Human Metabolome Database) local XML for metabolite info, chemical properties, biological context, disease links, spectra, and cross-DB mapping.

jaechang-hits/SciAgent-Skills3711 repo~6.1kAutomated safety check: PassCC-BY-4.011 days ago
137
137.Homer Motif Analysis

De novo and known TF motif enrichment in ChIP-seq/ATAC-seq peaks via HOMER.

jaechang-hits/SciAgent-Skills3711 repo~6.4kAutomated safety check: PassGPL-3.011 days ago
138
138.Interpro Database

Query InterPro REST API for protein domain architecture, family classification, and member-DB integration.

jaechang-hits/SciAgent-Skills3711 repo~7.6kAutomated safety check: PassCC-BY-4.011 days ago
139
139.Maxquant Proteomics

MaxQuant + Perseus proteomics pipeline: run MaxQuant for LFQ and SILAC; parse proteinGroups.txt in Python; filter contaminants/decoys; log2 + median-normalize; impute MNAR; t-test with FDR; volcano…

jaechang-hits/SciAgent-Skills3711 repo~7.2kAutomated safety check: PassApache-2.011 days ago
140
140.Metabolomics Workbench Database

Query Metabolomics Workbench REST API (4,200+ NIH studies) for metabolite ID, study discovery, RefMet standardization, m/z precursor searches, and gene/protein annotations.

jaechang-hits/SciAgent-Skills3711 repo~5.3kAutomated safety check: PassCC-BY-4.011 days ago
141
141.Omics Analysis Guide

Three-tiered approach to omics data analysis (transcriptomics, proteomics) covering validated pipelines, standard workflows, and custom methods

jaechang-hits/SciAgent-Skills3711 repo~7.1kAutomated safety check: PassUnknown11 days ago
142
142.Opentargets Database

Query Open Targets GraphQL API for target-disease associations, evidence, drug links, safety.

jaechang-hits/SciAgent-Skills3711 repo~5.1kAutomated safety check: PassApache-2.011 days ago
143
143.Pdb Database

Query RCSB PDB (200K+ structures) via the public REST + GraphQL APIs with plain requests (no SDK).

jaechang-hits/SciAgent-Skills3711 repo~7.7kAutomated safety check: PassBSD-3-Clause11 days ago
144
144.Prokka Genome Annotation

Annotate prokaryotic genomes (bacteria, archaea, viruses) via Prokka's BLAST/HMM pipeline.

jaechang-hits/SciAgent-Skills3711 repo~6.1kAutomated safety check: PassGPL-3.011 days ago

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