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Agent skill

Bindingdb Query

by QSong-github in QSong-github/DrugClaw

Query the BindingDB drug-target binding affinity database. An agent skill from QSong-github/DrugClaw.

No licenceAuto-check passedResearch & Science

Install Bindingdb Query

skills CLI
$ npx skills add QSong-github/DrugClaw --skill bindingdb-query -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install QSong-github/DrugClaw bindingdb-query --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/dti/bindingdb .claude/skills/bindingdb-query && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bindingdb-query
GitHub stars
116
Used in
1 other repo
Token cost
~648 tokens
SKILL.md length
248 words
Files
6
Skills in repo
31
Repo updated
First seen
Licence
None found

At a glance

Query the BindingDB drug-target binding affinity database. An agent skill from QSong-github/DrugClaw.

  • The user asks about protein-ligand binding data
  • SKILL.md covers API, Usage, Key Fields in Each Affinity… and Data Source
  • Runs Python scripts from its folder
  • Affinity measurements (Ki

What it does

Bindingdb Query is an agent skill from QSong-github/DrugClaw. Query the BindingDB drug-target binding affinity database. Use whenever the user asks about protein-ligand binding data, affinity measurements (Ki, IC50, Kd, EC50), or wants to look up binding partners for a UniProt ID, PDB ID, or compound SMILES string.

Its SKILL.md is about 650 tokens, which your agent loads only when the skill is triggered. The skill folder holds 5 other files (for example `README.md`, `__init__.py` and `bindingdb_skill.py`).

It sits in Research & Science, covering Drug discovery and cheminformatics. It works with UniProt. The repository describes itself as: 🦀 Agentic RAG for drug intelligence · 57 skills · 15 task categories · DTI · ADR · DDI · PGx · Repurposing · Powered by LangGraph.

When your agent uses it

  • The user asks about protein-ligand binding data
  • Affinity measurements (Ki
  • Wants to look up binding partners for a UniProt ID
  • Compound SMILES string

Example prompts

  • “/bindingdb-query”

Requirements

  • Python 3

What it can do on your machine

Read from SKILL.md and the folder at commit bc7b93e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships script files (Python), which the agent can run.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Links to these hosts (documentation or services it may open):

    • bindingdb.org

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bindingdb Query loads about 648 tokens when it runs. Until then it costs about 68 tokens; SKILL.md has 248 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~68
When it runs · the whole SKILL.md, loaded when a task matches
~648

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 248 words (~648 tokens).

“Search BindingDB binding affinity records by any entity. Auto-detects type by pattern:”

— opening of SKILL.md by QSong-github
name
bindingdb-query

Read the full SKILL.md on GitHub

Files

SKILL.md and 5 other files in skills/dti/bindingdb of QSong-github/DrugClaw.

  • SKILL.md
  • README.md
  • __init__.py
  • bindingdb_skill.py
  • example.py
  • retrieve.py

Open the folder on GitHubat commit bc7b93e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in QSong-github/DrugClaw, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Bindingdb Query next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bindingdb Query compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bindingdb Query this skillQSong-github/DrugClaw1161 repos~648Automated safety check: PassNone
Tooluniverseynulihao/AgentSkillOS6173 repos~2.5kAutomated safety check: PassNone
TooluniverseAgentTeam-TaichuAI/ScienceClaw670—~1.2kAutomated safety check: PassNone
Bindingdb DatabaseLeonChaoX/qinyan-academic-skills9372 repos~3kAutomated safety check: PassCC-BY-3.0
Gtopdb Databasejaechang-hits/SciAgent-Skills3701 repos~4.9kAutomated safety check: PassCustom licence
Pdb Databasejaechang-hits/SciAgent-Skills3701 repos~7.7kAutomated safety check: PassBSD-3-Clause

Similar skills

  • Tooluniverse

    ynulihao/AgentSkillOS

    A skill your agent uses when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery.

    617 GitHub starsUsed in 3 repos~2.5k tokens
    Research & ScienceAuto-check passed

  • Tooluniverse

    AgentTeam-TaichuAI/ScienceClaw

    Access 1000+ scientific tools through ToolUniverse for drug discovery, protein analysis, genomics, literature search, clinical data, ADMET prediction, molecular docking, and more.

    670 GitHub stars~1.2k tokensUpdated 5 mo ago
    Research & ScienceAuto-check passed

  • Bindingdb Database

    LeonChaoX/qinyan-academic-skills

    Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50).

    937 GitHub starsUsed in 2 repos~3k tokens
    Research & ScienceAuto-check passed

  • Gtopdb Database

    jaechang-hits/SciAgent-Skills

    Query IUPHAR/BPS Guide to Pharmacology (GtoPdb) for receptor-ligand interactions, target/ligand metadata, families, and approved drugs.

    370 GitHub starsUsed in 1 repo~4.9k tokens
    Research & ScienceAuto-check passed

  • Pdb Database

    jaechang-hits/SciAgent-Skills

    Query RCSB PDB (200K+ structures) via the public REST + GraphQL APIs with plain requests (no SDK).

    370 GitHub starsUsed in 1 repo~7.7k tokens
    Research & ScienceAuto-check passed

  • Alphafold Database Fetch And Analyze

    google-deepmind/science-skills

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    3.2k GitHub starsUsed in 2 repos~1.2k tokens
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More from QSong-github/DrugClaw

All 31 skills in this repo

  • Dailymed Query

    QSong-github/DrugClaw

    Query DailyMed for FDA drug label / package insert information.

    116 GitHub starsUsed in 1 repo~581 tokens
    Auto-check passed

  • Drkg Query

    QSong-github/DrugClaw

    Query the DRKG (Drug Repurposing Knowledge Graph). An agent skill from QSong-github/DrugClaw.

    116 GitHub starsUsed in 1 repo~915 tokens
    Auto-check passed

  • Drugbank Query

    QSong-github/DrugClaw

    Query a locally downloaded DrugBank database. An agent skill from QSong-github/DrugClaw.

    116 GitHub starsUsed in 1 repo~462 tokens
    Auto-check passed

  • Drugcentral Query

    QSong-github/DrugClaw

    Query the DrugCentral drug pharmacology database. An agent skill from QSong-github/DrugClaw.

    116 GitHub starsUsed in 1 repo~710 tokens
    Auto-check passed

  • Drugmechdb Query

    QSong-github/DrugClaw

    Query the DrugMechDB drug mechanism-of-action database. An agent skill from QSong-github/DrugClaw.

    116 GitHub starsUsed in 1 repo~734 tokens
    Auto-check passed

  • Fda Orange Book Query

    QSong-github/DrugClaw

    Query or inspect the FDA Orange Book - FDA-Approved Drug Products Listing resource for drug-centric tasks with emphasis on drug knowledgebase Use whenever Codex needs the calling pattern…

    116 GitHub starsUsed in 1 repo~521 tokens
    Auto-check passed

Works with

Categories

Questions about Bindingdb Query

What does Bindingdb Query do?

Query the BindingDB drug-target binding affinity database. An agent skill from QSong-github/DrugClaw. Bindingdb Query is an agent skill from QSong-github/DrugClaw. Query the BindingDB drug-target binding affinity database.

When should I use Bindingdb Query?

Bindingdb Query fits situations like: the user asks about protein-ligand binding data; affinity measurements (Ki; wants to look up binding partners for a UniProt ID; compound SMILES string.

How do I install Bindingdb Query in Claude Code?

Run `npx skills add QSong-github/DrugClaw --skill bindingdb-query -a claude-code`. Or copy the skill folder (skills/dti/bindingdb in QSong-github/DrugClaw) into .claude/skills/bindingdb-query in your project. Claude Code loads it when a task matches its description.

How do I install Bindingdb Query in Codex?

Run `npx skills add QSong-github/DrugClaw --skill bindingdb-query -a codex`. Or copy the skill folder (skills/dti/bindingdb in QSong-github/DrugClaw) into .agents/skills/bindingdb-query in your project. Codex loads it when a task matches its description.

Can I use Bindingdb Query in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add QSong-github/DrugClaw --skill bindingdb-query -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bindingdb-query, .gemini/skills/bindingdb-query, .github/skills/bindingdb-query and .opencode/skills/bindingdb-query in your project.

What does Bindingdb Query need to run?

Going by SKILL.md and its folder, Bindingdb Query needs Python for the scripts in its folder. Our summary lists: Python 3.

Does Bindingdb Query access the network?

SKILL.md names 1 domain. As links in the text: bindingdb.org. This is read from the text; nothing was executed.

Is Bindingdb Query safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bindingdb Query use?

No licence was found for Bindingdb Query or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bindingdb Query use?

About 648 tokens (SKILL.md is roughly 2.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bindingdb Query?

Skills that share tags, products or a category with Bindingdb Query: Tooluniverse (ynulihao/AgentSkillOS, 617 stars), Tooluniverse (AgentTeam-TaichuAI/ScienceClaw, 670 stars), Bindingdb Database (LeonChaoX/qinyan-academic-skills, 937 stars) and Gtopdb Database (jaechang-hits/SciAgent-Skills, 370 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bindingdb Query?

QSong-github (a GitHub user) maintains it in QSong-github/DrugClaw, which has 116 GitHub stars. The repository holds 31 skills in this directory. The repository was last updated on August 25, 2026.

Source: QSong-github/DrugClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.