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By adaptyvbio
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Validate protein designs using AlphaFold2 structure prediction. | adaptyvbio/ | 164 | 3 repos | ~1.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 2 | End-to-end binder design using BindCraft hallucination. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.3k | Automated safety check: Pass | MIT | 3 mo ago |
| 3 | Guidance for choosing the right protein binder design tool. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.8k | Automated safety check: Pass | MIT | 3 mo ago |
| 4 | 4.Boltzgen All-atom protein design using BoltzGen diffusion model. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~2k | Automated safety check: Pass | MIT | 3 mo ago |
| 5 | 5.Chai Structure prediction using Chai-1, a foundation model for molecular structure. | adaptyvbio/ | 164 | 3 repos | ~1.5k | Automated safety check: Pass | MIT | 3 mo ago |
| 6 | End-to-end guidance for protein design pipelines. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 7 | Quality control metrics and filtering thresholds for protein design. | adaptyvbio/ | 164 | 3 repos | ~3.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 8 | Design protein sequences using ProteinMPNN inverse folding. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.8k | Automated safety check: Pass | MIT | 3 mo ago |
| 9 | Generate protein backbones using RFdiffusion, a diffusion-based generative model for de novo protein structure generation. | adaptyvbio/ | 164 | 3 repos | ~2.3k | Automated safety check: Pass | MIT | 3 mo ago |
| 10 | 10.Boltz Structure prediction using Boltz-1/Boltz-2, an open biomolecular structure predictor. | adaptyvbio/ | 164 | 3 repos | ~1.3k | Automated safety check: Pass | MIT | 3 mo ago |
| 11 | Guidance for cell-free protein synthesis (CFPS) optimization. | adaptyvbio/ | 164 | 3 repos | ~2.8k | Automated safety check: Pass | MIT | 3 mo ago |
| 12 | 12.Foldseek Structure similarity search with Foldseek. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.1k | Automated safety check: Pass | MIT | 3 mo ago |
| 13 | 13.Ipsae Binder design ranking using ipSAE (interprotein Score from Aligned Errors). | adaptyvbio/ | 164 | 3 repos | ~1.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 14 | 14.Ligandmpnn Ligand-aware protein sequence design using LigandMPNN. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 15 | 15.Pdb Fetch and analyze protein structures from RCSB PDB. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.4k | Automated safety check: Pass | MIT | 3 mo ago |
| 16 | 16.Solublempnn Solubility-optimized protein sequence design using SolubleMPNN. | adaptyvbio/ | 164 | 3 repos | ~1.1k | Automated safety check: Pass | MIT | 3 mo ago |
| 17 | Goal-oriented binder design campaign planning and health assessment. | adaptyvbio/ | 164 | 2 repos | ~1.8k | Automated safety check: Pass | MIT | 3 mo ago |
| 18 | 18.Setup First-time setup for protein design tools. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 2 repos | ~896 | Automated safety check: Pass | MIT | 3 mo ago |
| 19 | 19.Uniprot Access UniProt for protein sequence and annotation retrieval. | adaptyvbio/ | 164 | 2 repos | ~1.3k | Automated safety check: Pass | MIT | 3 mo ago |
| 20 | Guidance for SPR and BLI binding characterization experiments. | adaptyvbio/ | 164 | 3 repos | ~2.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 21 | 21.Germinal De novo antibody and nanobody (VHH) design with Germinal. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 1 repo | ~739 | Automated safety check: Pass | MIT | 3 mo ago |
| 22 | 22.Mosaic Multi-objective, gradient-based protein binder design with Mosaic. | adaptyvbio/ | 164 | 1 repo | ~1.7k | Automated safety check: Pass | MIT | 3 mo ago |
| 23 | 23.Protenix Structure prediction with Protenix, an open AlphaFold3 reproduction. | adaptyvbio/ | 164 | 1 repo | ~695 | Automated safety check: Pass | MIT | 3 mo ago |
| 24 | 24.Esm ESM protein language models for embeddings, sequence scoring, structure prediction, and binder design. | adaptyvbio/ | 164 | — | ~2k | Automated safety check: Pass | MIT | 3 mo ago |
