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Research & Science · SQLite
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Define extraction schema, extract study data from full texts, and store it in a structured database for meta-analysis. | htlin222/ | 139 | — | ~1.6k | Automated safety check: Pass | Unknown | 18 days ago |
| 2 | BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation. | ai4nucleome/ | 115 | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 3 | Stand up a persistent, self-refreshing local mirror of a bulk upstream dataset with the MirrorService (@cyanheads/mcp-ts-core/mirror). | cyanheads/ | 158 | — | ~2.6k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 4 | 4.Import A skill your agent uses when the user wants to import papers from Endnote XML/RIS, Zotero Web API or local SQLite, attach PDFs, match PDFs to records, or supplement records with PDF content. | ZimoLiao/ | 577 | — | ~790 | Automated safety check: Pass | MIT | 15 days ago |
| 5 | Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 6 | Parses, queries, converts, and extracts from GTF and GFF3 gene-model annotation files - walking the gene/transcript/exon/CDS hierarchy with gffutils (queryable SQLite DB), converting formats and… | GPTomics/ | 1.2k | 1 repo | ~4.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 7 | A multi-source clinical-trials intelligence system — aggregates, normalizes, and analyzes trials across ClinicalTrials.gov, EU CTIS, and biomedical sources, with an offline SQLite engine no… | mvanhorn/ | 2.1k | — | ~4.6k | Automated safety check: Notes | Apache-2.0 | yesterday |
| 8 | Agent-native Parallel web research with a local SQLite memory no other Parallel CLI keeps. | mvanhorn/ | 2.1k | — | ~8.1k | Automated safety check: Notes | Apache-2.0 | yesterday |
| 9 | Your entire Zotero research library, searchable offline — version-based incremental sync into SQLite with full-text search no other Zotero tool has. | mvanhorn/ | 2.1k | — | ~7.8k | Automated safety check: Notes | Apache-2.0 | yesterday |
| 10 | Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
