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Research & Science · For data scientists
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 145 | Quality control for bottom-up proteomics across three levels -- instrument/raw-signal (mass accuracy, RT/iRT fit, FWHM, TIC vs injection time, % MS2 identified), identification/run (missed… | GPTomics/ | 1.2k | 1 repo | ~6.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 146 | 146.Stats Econometrics skill for descriptive statistics and summary tables. | brycewang-stanford/ | 4.6k | — | ~2k | Automated safety check: Pass | Unknown | 6 days ago |
| 147 | Load this first for any task involving images, pictures, photos, scans, frames, volumes, or visual data — including reading, writing, filtering, enhancing, denoising, sharpening, deblurring… | matlab/ | 1.1k | — | ~3.7k | Automated safety check: Pass | Unknown | 2 days ago |
| 148 | 148.Lammps Deepmd Run LAMMPS molecular dynamics with DeePMD-kit machine learning potentials. | Hello-QM/ | 205 | — | ~1k | Automated safety check: Pass | AGPL-3.0 | 19 days ago |
| 149 | 149.Biopython Phylo Use Bio.Phylo to read/write phylogenetic trees and perform visualization and statistics; use when tree parsing/conversion, pruning/rerooting, distance calculation, or plotting is required. | aipoch/ | 1.9k | — | ~1.8k | Automated safety check: Pass | MIT | 24 days ago |
| 150 | Professional beautification tool for gene expression heatmaps, automatically adds clustering trees, color annotation tracks, and intelligently optimizes label layout. | aipoch/ | 1.9k | — | ~3.5k | Automated safety check: Pass | MIT | 24 days ago |
| 151 | Analyze data with metagenomic-krona-chart using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation. | aipoch/ | 1.9k | — | ~2.5k | Automated safety check: Pass | MIT | 24 days ago |
| 152 | Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results. | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 24 days ago |
| 153 | Analyze data with phylogenetic-tree-styler using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation. | aipoch/ | 1.9k | — | ~2.5k | Automated safety check: Pass | MIT | 24 days ago |
| 154 | 154.Scikit Bio A Python bioinformatics toolkit for sequence, phylogeny, and microbiome/community-ecology analysis; use it when you need to compute diversity/ordination/statistics from biological data and standard… | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 24 days ago |
| 155 | A skill for performing sequence alignment using NCBI BLAST API. | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 24 days ago |
| 156 | 156.Esm Toolkit for protein language models (ESM3 for multimodal generative protein design; ESM C for efficient embeddings). | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 157 | 157.Bio Chipseq Qc ChIP-seq quality control metrics including FRiP (Fraction of Reads in Peaks), cross-correlation analysis (NSC/RSC), library complexity, and IDR (Irreproducibility Discovery Rate) for replicate… | FreedomIntelligence/ | 3.1k | — | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 158 | Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 159 | 159.Bio Splicing Qc Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 160 | Visualize copy number profiles, segments, and compare across samples. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 161 | Python library for single-particle tracking (SPT) in video microscopy via the Crocker-Grier algorithm. | jaechang-hits/ | 374 | 1 repo | ~6.6k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 162 | 162.Check Env Verifies required tools (Quarto, uv, Python, R, Stata, TeX) and Jupyter kernels are installed. | brycewang-stanford/ | 4.6k | — | ~578 | Automated safety check: Notes | Unknown | 6 days ago |
| 163 | 163.E1 E1-Quantitative Analysis Guide with Code Generation & Sensitivity Analysis VS-Enhanced with Full 5-Phase process: Avoids obvious analyses, explores innovative methodologies Expanded to include… | brycewang-stanford/ | 4.6k | — | ~9.3k | Automated safety check: Pass | Unknown | 6 days ago |
| 164 | 164.New Notebook Creates a Jupyter notebook with Jupytext pairing and registers it in quarto.yml. | brycewang-stanford/ | 4.6k | — | ~361 | Automated safety check: Notes | Unknown | 6 days ago |
| 165 | A skill your agent uses when the user asks to "design an experiment", "build a predictive model", "run A/B test analysis", "perform causal inference", "engineer features", "evaluate model… | borghei/ | 891 | — | ~1.7k | Automated safety check: Pass | MIT | 4 days ago |
| 166 | Compute aerospace environment properties including atmosphere (ISA, COESA, NRLMSISE-00, non-standard, CIRA), gravity (spherical harmonic, WGS84, zonal, centrifugal), horizontal wind (HWM), magnetic… | matlab/ | 1.1k | — | ~4.2k | Automated safety check: Pass | Unknown | 2 days ago |
| 167 | Toolkit for structuring hypotheses, variants, guardrails, and measurement plans. | gtmagents/ | 414 | 1 repo | ~837 | Automated safety check: Pass | Apache-2.0 | 6 mo ago |
| 168 | 168.Sc Clustering Load when building the neighbour graph, embedding (UMAP/t-SNE/diffmap/PHATE), and clustering (Leiden/Louvain) on a normalised single-cell AnnData. | TianGzlab/ | 161 | — | ~2.4k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 169 | 169.Sc Enrichment Load when running bulk-style pathway enrichment (ORA / GSEA / GSEA-R / GSVA-R) on a per-group ranked DE / marker list against a gene-set library. | TianGzlab/ | 161 | — | ~2.4k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 170 | 170.Sc Grn Load when inferring TF → target gene regulatory networks on a normalised scRNA AnnData via pySCENIC (GRNBoost2 + cisTarget + AUCell) or correlation-based GRN fallback (when arboreto is unavailable… | TianGzlab/ | 161 | — | ~1.7k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 171 | 171.Spatial Cnv Load when inferring copy-number variation per spot on a preprocessed spatial AnnData with chromosome-annotated genes via infercnvpy (default — log-ratio sliding-window) or Numbat (R, allele-aware… | TianGzlab/ | 161 | — | ~1.3k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 172 | DL cell/nucleus segmentation for fluorescence and brightfield microscopy. | jaechang-hits/ | 374 | 1 repo | ~3.5k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 173 | Generate photorealistic rendering scripts for PyMOL and UCSF ChimeraX. | aipoch/ | 1.9k | — | ~2.8k | Automated safety check: Pass | MIT | 24 days ago |
| 174 | Generates compliant medical case report articles for WeChat. | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 24 days ago |
| 175 | 175.Meta Analysis Perform quantitative meta-analysis with effect size calculation, forest plots, funnel plots, and heterogeneity assessment. | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 24 days ago |
| 176 | 176.Phi Prompt Guard Runtime, prompt-time behavioral guardrail that helps reduce PHI exposure in LLM-assisted workflows by detecting PHI-bearing prompts, avoiding unsafe tool actions that would pull more PHI in, and… | aipoch/ | 1.9k | — | ~4.2k | Automated safety check: Pass | MIT | 24 days ago |
| 177 | 科研分析能力入口：统计、因果推断、数据清洗与可视化。Use for statistics, econometrics, wrangling, causal inference, charts, and publication figures. | wentorai/ | 858 | — | ~169 | Automated safety check: Pass | Unknown | 1 mo ago |
| 178 | 178.Analyze End-to-end data analysis dispatching Coder and Data-engineer for implementation, coder-critic for review. | brycewang-stanford/ | 4.6k | — | ~2.2k | Automated safety check: Notes | Unknown | 6 days ago |
| 179 | 179.Data Cleaning Clean and transform messy data for analysis in Python, R, or Stata | brycewang-stanford/ | 4.6k | — | ~2.9k | Automated safety check: Pass | Unknown | 6 days ago |
| 180 | 180.Data Doc Document datasets, variables, sources, and merge keys for replication | brycewang-stanford/ | 4.6k | — | ~1k | Automated safety check: Pass | Unknown | 6 days ago |
| 181 | 181.Explain Codebase Explain how a specific area / file / feature / topic actually works — grounded line-by-line in the real code, with file:line citations. | atherio-danp/ | 109 | — | ~893 | Automated safety check: Notes | No licence | 2 mo ago |
| 182 | A skill your agent uses when targeting ACM Conference on Fairness, Accountability, and Transparency (FAccT) or deciding whether a computer-science manuscript fits this venue. | franklee16/ | 223 | 1 repo | ~2k | Automated safety check: Pass | No licence | 23 days ago |
| 183 | 183.Amr Submission A skill your agent uses when running the final pre-submission preflight for an Academy of Management Review (AMR) manuscript — ScholarOne portal, AOM format and length, abstract, anonymization for… | franklee16/ | 223 | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 23 days ago |
| 184 | A skill your agent uses when targeting Annual Meeting of the Association for Computational Linguistics (ACL) or deciding whether a computer-science manuscript fits this venue. | franklee16/ | 223 | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 23 days ago |
| 185 | A skill your agent uses when preparing the reproducibility / replication materials for an American Political Science Review (APSR) manuscript. | franklee16/ | 223 | 1 repo | ~1.1k | Automated safety check: Pass | No licence | 23 days ago |
| 186 | A skill your agent uses when positioning an American Sociological Review (ASR) manuscript against the literature so it reads as a broad sociological contribution rather than a subfield note. | franklee16/ | 223 | 1 repo | ~798 | Automated safety check: Pass | No licence | 23 days ago |
| 187 | 187.Est Study Design A skill your agent uses when designing experiments, sampling campaigns, or modeling studies for Environmental Science & Technology (ES&T) so the design survives expert review — environmental… | franklee16/ | 223 | 1 repo | ~882 | Automated safety check: Pass | No licence | 23 days ago |
| 188 | 188.Interspeech A skill your agent uses when targeting INTERSPEECH (INTERSPEECH) or deciding whether a computer-science manuscript fits this venue. | franklee16/ | 223 | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 23 days ago |
| 189 | A skill your agent uses when preparing the replication/transparency materials for an International Organization (IO) manuscript. | franklee16/ | 223 | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 23 days ago |
| 190 | A skill your agent uses when running estimation and inference for a Journal of Applied Econometrics (JAE) manuscript so the analysis is reproducible and archive-ready — every table/figure… | franklee16/ | 223 | 1 repo | ~629 | Automated safety check: Pass | No licence | 23 days ago |
| 191 | A skill your agent uses when assembling the mandatory JAE Data Archive deposit for an accepted Journal of Applied Econometrics paper — plain-ASCII/CSV data with a readme, the programs that replicate… | franklee16/ | 223 | 1 repo | ~671 | Automated safety check: Pass | No licence | 23 days ago |
| 192 | 192.Jbes Rebuttal A skill your agent uses when a Journal of Business & Economic Statistics (JBES) decision letter arrives (R&R or major revision) and a response strategy and letter are needed for a methods paper. | franklee16/ | 223 | 1 repo | ~1k | Automated safety check: Pass | No licence | 23 days ago |
