Research & Science · For developers

Identifies super-enhancers from H3K27ac, MED1, or BRD4 ChIP-seq using ROSE, ROSE2, LILY, HOMER -style super, and ENCODE dELS cross-referencing.

GPTomics/bioSkills

Download raw sequencing reads from NCBI SRA using sra-tools (prefetch, fasterq-dump, vdb-validate) or the ENA mirror.

GPTomics/bioSkills

A skill your agent uses when a paper needs publication-ready figures or a visual abstract.

Aperivue/medsci-skills

ADR-152 — weighted similarity between two harness fingerprints (genome + score JSON).

ruvnet/ruflo

Verifies factual claims in documents using web search and official sources, then proposes corrections with user confirmation.

daymade/claude-code-skills

Use Boltz2 NIM for biomolecular structure prediction and binding affinity.

NVIDIA/skills

A skill your agent uses when a target journal has no profile yet.

Aperivue/medsci-skills

A skill your agent uses when a skill fails for a missing tool or the environment needs checking.

Aperivue/medsci-skills

A skill your agent uses when routing Alibaba Cloud Model Studio requests to the right local skill (Qwen text, coder, deep research, image, video, audio, search and multimodal skills).

cinience/alicloud-skills

Help users master the transition from manual coding to managing AI-driven development workflows by focusing on high-level direction, parallel tasking, and rigorous automated review.

RefoundAI/lenny-skills

Queries ClinVar for variant pathogenicity classifications, ClinGen VCEP curations, and somatic-vs-germline interpretations via REST API, weekly VCF, or bulk XML.

GPTomics/bioSkills

Query protein-protein and gene interaction databases (STRING, BioGRID, IntAct, SIGNOR, Reactome, HuRI, HuMAP, OmniPath, ConsensusPathDB, DIP).

GPTomics/bioSkills

Compute evidence-aware polygenic risk scores from a local VCF or WGS file through the validated just-prs engine and a pinned local just-prs MCP server.

ClawBio/ClawBio

Wrapper skill for running nf-core/rnastructurome — chemical-probing RNA structure analysis (SHAPE/DMS, RT-stop/MaP readout) from FASTQ to per-base reactivity, secondary-structure predictions, and 2D…

ClawBio/ClawBio

Agent-callable Perplexity tools — ask web-grounded questions with citations, run and poll deep research, list models, and search the web.

zapier/connectors

Direct REST API access to UniProt for protein search, entry retrieval, and identifier mapping; use when you need programmatic UniProtKB queries or cross-database ID conversion.

aipoch/medical-research-skills

Read-only R code review protocol for .R scripts. An agent skill from pedrohcgs/claude-code-my-workflow.

pedrohcgs/claude-code-my-workflow

Create and manipulate Seq, MutableSeq, and SeqRecord objects using Biopython.

GPTomics/bioSkills

Runs and configures curated nf-core community Nextflow pipelines (rnaseq, sarek, atacseq, methylseq, ampliseq, taxprofiler, fetchngs) reproducibly, pinning the pipeline revision with -r and…

GPTomics/bioSkills

Authors bioinformatics pipelines in WDL (Workflow Description Language) run by Cromwell or miniwdl, targeting the GATK/Broad and Terra/AnVIL/BioData Catalyst cloud ecosystem, with tasks, workflows…

GPTomics/bioSkills

A skill your agent uses when deciding which AER-skills sub-skill to use next, before choosing a specialized skill or after a user asks how to sequence manuscript work from topic selection through…

brycewang-stanford/Auto-Empirical-Research-Skills

Use Jacobian’s typed operations when exact computation or structural analysis can help solve a mathematical problem.

morluto/jacobian

Generate and rank research ideas given a broad direction. An agent skill from AI4Scientist/nano-scientist.

AI4Scientist/nano-scientist

A skill your agent uses for all requirements-related work in a MATLAB MBSE project using the Requirements Toolbox (slreq).

matlab/agent-skills-playground

A skill your agent uses when the user wants to generate or edit images with Google's Nanobanana/Gemini image models using the official Gemini API shape, or when they need publication-style…

LeoYeAI/openclaw-master-skills

Query the CADEC (CSIRO Adverse Drug Event Corpus). An agent skill from QSong-github/DrugClaw.

QSong-github/DrugClaw

Scaffold a new MCP tool definition. An agent skill from cyanheads/pubmed-mcp-server.

cyanheads/pubmed-mcp-server

Context-aware Q&A with auto context gathering. An agent skill from sd0xdev/sd0x-harness.

sd0xdev/sd0x-harness

This skill should be used when user encounters "paper-search MCP error", "Docker not found", "Docker not running", "paper search not working", or needs help configuring paper search integration.

fcakyon/claude-codex-settings

A skill your agent uses when refactoring research code for publication, adding documentation to existing analysis scripts, creating reproducible computational workflows, or preparing code for…

aipoch/medical-research-skills

Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence).

GPTomics/bioSkills

Generate structurally realistic synthetic datasets for pipeline prototyping, test coverage, or prospective power analysis.

flonat/flonat-research

Dense, machine-readable API reference for PyFixest — high-dimensional fixed-effects OLS/WLS/IV and Poisson (feols, fepois, feglm), clustered/robust standard errors, R-style formula syntax, and…

brycewang-stanford/Auto-Empirical-Research-Skills

R code review for the sewage project. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills.

brycewang-stanford/Auto-Empirical-Research-Skills

Search Google, Bing, Google News and Google Scholar, and read public pages, through the Serply MCP server.

davepoon/buildwithclaude

Query STRING REST API for PPIs (59M proteins, 20B interactions, 5000+ species).

jaechang-hits/SciAgent-Skills

A skill your agent uses when completing tasks, implementing major features, or before merging.

RedWoodOG/Hermes-Desktop

Programmatic access to the PubChem database (via PUG-REST API and PubChemPy) for searching chemical compounds, retrieving physicochemical properties, performing structure similarity/substructure…

aipoch/medical-research-skills

Converts research text into a Mermaid technical roadmap flowchart.

aipoch/medical-research-skills

Add causal reasoning to agent actions. An agent skill from sundial-org/awesome-openclaw-skills.

sundial-org/awesome-openclaw-skills

Investigates bugs using scientific method, manages debug sessions, handles checkpoints.

allgpt-co/QuickVoice

Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF.

FreedomIntelligence/OpenClaw-Medical-Skills

Query gnomAD for population allele frequencies to assess variant rarity.

FreedomIntelligence/OpenClaw-Medical-Skills

Exercise tools, resources, and prompts against a live HTTP server via MCP JSON-RPC over curl.

cyanheads/pubmed-mcp-server

A skill your agent uses when designing a GEO Signal Monitor, AI answer monitoring system, citation tracking plan, brand-fact correction loop, GEO monthly report, alert rules, dashboard fields, or…

yaojingang/yao-geo-skills

Produce a minimal Exa diagnostic bundle that preserves reproducibility without exposing credentials, queries, retrieved content, or customer data.

jeremylongshore/tons-of-skills-marketplace

Run asynchronous Exa Agent research with a bounded schema, effort, terminal-state policy, citations, and cleanup decision.

jeremylongshore/tons-of-skills-marketplace

Audit an Exa integration for stale search types, unsafe secrets, ignored partial failures, unbounded content work, weak citations, and orphaned asynchronous resources.

jeremylongshore/tons-of-skills-marketplace