Data & Analytics · Python · For researchers

Creates, revises, audits and exports manuscript-ready scientific figures in Python or R, and routes AI-generated graphical abstracts to a separate workflow.

Yuan1z0825/nature-skills

Analyzes Neuropixels recordings from SpikeGLX or Open Ephys through preprocessing, drift correction, Kilosort4 spike sorting, quality metrics and curation.

davila7/claude-code-templates

Renders ready-made scientific figure templates, such as raincloud plots, Taylor diagrams and chord diagrams, from bundled Python scripts in the MathModel sandbox.

jihe520/MathModelAgent

Covers publication-ready matplotlib figures for academic papers, slides, and reports—bars, trends, scatter, heatmaps, and multi-panel layouts—with…

ChenLiu-1996/figures4papers

Build or review source-backed descriptive, diagnostic, predictive, and prescriptive analysis for consequential decisions.

limingrui679-design/high-stakes-analytics-decision-lab

Redraws your data as a matplotlib figure in the visual style of a reference paper figure, using a drawer and reviewer loop.

VILA-Lab/FigMirror

Reference patterns for writing qiskit 2.x code for variational quantum machine learning: feature maps, VQC training, VQE for chemistry, MPS circuits and noise models.

aiming-lab/AutoResearchClaw

Mirrors the visual style of a top-conference paper figure onto your own data, producing a camera-ready PDF and a self-contained matplotlib script.

VILA-Lab/FigMirror

Generates result-evidence contracts, tables and runnable q1 to q3 modeling code scaffolds for a math modeling paper from a model route, a data plan and cleaned data.

yushui2022/MathModel-Skill

数学建模竞赛解题全流程指导。覆盖国赛(CUMCM)和美赛(MCM/ICM)全部题型(A-F)，提供12种问题本质分析、95+场景模型决策矩阵、5本算法Cookbook、11本完整例题Playbook、22个Python+7个MATLAB可运行代码模板。与math-modeling-paper形成"解题→写作"配对。当用户提及建模思路、选什么模型、怎么建模、赛题求解、粘贴赛题文本、美赛/国赛题目分…

Lupynow/math-modeling-skills

Turns your CSV or Excel data and a plain-language request into a publication-style scientific chart by adapting a catalog template, then checks and repairs it.

hrdZhu/modelviz-skill

Writes statistical analysis code for experimental data, runs it through a four-round review, and reports effect sizes, p-values and confidence intervals.

lingzhi227/agent-research-skills

Lets a plotting agent query a gallery of scientific figure references, show candidates for you to pick from, and export the chosen ones before it writes plot code.

Dsadd4/AgentFigureGallery

Finds authoritative public data sources for modeling tasks, prefers official APIs and bulk downloads, and outputs a reproducible fetch and cleaning plan with citations.

yushui2022/MathModel-Skill

Runs exploratory data analysis on tabular data after you confirm each column's measurement level, then writes CSV tables and a narrative summary.

TyrealQ/q-skills

Enforce Python execution through uv instead of direct interpreter calls.

DeepMIMO/DeepMIMO

Extracts pixel, video-frame, speech, music and visual-semantic features from image, video and audio files for research datasets, using local tools or the Gemini API.

TyrealQ/q-skills

Guides use of deepTools on sequencing data: BAM to bigWig conversion, QC, sample correlation, and heatmaps or profiles around TSS and peaks for ChIP-seq, RNA-seq and ATAC-seq.

davila7/claude-code-templates

Generates publication-quality scientific figures with matplotlib or seaborn through query expansion, a run-and-retry coding loop and a visual check of the rendered PNG.

lingzhi227/agent-research-skills

Builds, fits, checks and compares Bayesian models in PyMC, from priors and NUTS sampling to variational inference, LOO and WAIC comparison, and diagnostics.

davila7/claude-code-templates

Prepares, validates and runs DP-GEN simplify jobs that thin out repeated or redundant DeepMD datasets, generating param.json and machine.json for local or scheduler runs.

jinzhezenggroup/computational-chemistry-agent-skills

Manages biological datasets with LaminDB: versioned artifacts, run lineage, ontology-based annotation, schema validation and links to workflow managers and ML tools.

davila7/claude-code-templates

Create, revise, or audit academic data/result figures for CS/AI/ML papers.

joshua-zyy/academic-paper-writer

A skill your agent uses when the user wants an end-to-end AI4S research pipeline — broad direction or specific topic in, full research package out (exploration + literature survey + experiment +…

ai4s-research/ai4s-skills

Detects CPU, GPU, memory and disk resources before heavy scientific tasks and writes a JSON file with advice on parallelism, out-of-core work and GPU use.

davila7/claude-code-templates

Runs differential gene expression analysis on bulk RNA-seq counts with PyDESeq2: design formulas, Wald tests, FDR correction and volcano or MA plots.

davila7/claude-code-templates

Queries the openFDA API from Python for drug, device, food and veterinary data: adverse events, recalls, labels, approvals, NDC and UNII lookups.

davila7/claude-code-templates

Works with genomic intervals using gtars, a Rust toolkit with Python bindings: overlap detection, coverage tracks, tokenization for ML models and reference sequences.

davila7/claude-code-templates

Processes digital pathology whole slide images with histolab: tissue detection, mask creation, tile extraction and dataset preparation for deep learning.

davila7/claude-code-templates

Processes physiological signals with NeuroKit2 in Python: ECG, PPG, EEG, EDA, respiration, EMG and EOG, including HRV, events and complexity measures.

davila7/claude-code-templates

Builds machine learning pipelines on clinical data with PyHealth: EHR datasets, prediction tasks, medical code mapping, healthcare models and evaluation.

davila7/claude-code-templates

Fits and evaluates survival models with scikit-survival: Cox models, Random Survival Forests, boosting, survival SVMs, concordance index, Brier score and competing risks.

davila7/claude-code-templates

Consolidates BERTopic, LDA or NMF topic output into a theory-driven classification framework and writes the final labels back to an Excel file.

TyrealQ/q-skills

Turns raw flux balance analysis output and a COBRApy model into gene essentiality maps, phenotypic phase planes, flux sampling results, pathway summaries and secretion predictions.

aiming-lab/AutoResearchClaw

Plugin shim for the mathmodel-skill competition workflow. An agent skill from handsomeZR-netizen/mathmodel-skill.

handsomeZR-netizen/mathmodel-skill

Load when correcting batch effects in bulk expression using R sva ComBat or the legacy Python parametric approximation.

TianGzlab/OmicsClaw

Computes RDKit physicochemical descriptors and molecular fingerprints from SMILES through a uv-run CLI script that skips and logs invalid molecules.

jinzhezenggroup/computational-chemistry-agent-skills

Builds the code for a frozen research experiment test-first, with leakage controls, seed handling and saved evidence so results can be rerun and audited.

Light0305/Light-skills

Design and analyze studies in sociolinguistics, language variation, acoustic phonetics, discourse analysis, language contact, and computational linguistics.

joshzyj/open-scholar-skill

A skill your agent uses when creating, migrating, or debugging pixi environments, especially for scientific Python, bioinformatics, single-cell analysis, CUDA/PyTorch, Jupyter/VS Code kernels…

xuzhougeng/wisp-science

Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results.

aipoch/medical-research-skills

Production-ready genomics and epigenomics data processing for BixBench questions.

wu-yc/LabClaw

A skill your agent uses when data needs statistical analysis.

Aperivue/medsci-skills

Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt.

FreedomIntelligence/OpenClaw-Medical-Skills

面向 Nature Portfolio 与高影响力期刊的证据驱动科研绘图技能。用于从原始或汇总数据设计单图与多面板 figure、选择合适图形语法、编写 Python/R 绘图代码、重绘现有图件、生成机制示意图草案、撰写图注并导出可编辑 SVG/PDF 与高分辨率 TIFF/PNG；同时检查数据完整性、颜色可访问性、统计标注和最终尺寸可读性。触发场景包括 Nature…

LeonChaoX/qinyan-academic-skills

Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially…

aipoch/medical-research-skills

Handles BED-format genomic intervals (BED3 through BED12, narrowPeak/broadPeak) and the coordinate-system substrate the whole interval category rests on, with bedtools (CLI) and…

GPTomics/bioSkills

Computes linkage disequilibrium (r2, D', composite Rogers-Huff r2), prunes correlated variants, clumps GWAS summary statistics to lead SNPs, and defines haplotype blocks with PLINK 1.9/2.0 and…

GPTomics/bioSkills