Agent skill

Vdjdb Build Integrity

by antigenomics in antigenomics/vdjdb-db

Validate VDJdb build code, CI, output contracts and release promotions against a released corpus.

Custom licenceAuto-check passedWriting & Content

Install Vdjdb Build Integrity

skills CLI
$ npx skills add antigenomics/vdjdb-db --skill vdjdb-build-integrity -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install antigenomics/vdjdb-db vdjdb-build-integrity --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/antigenomics/vdjdb-db.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/vdjdb-build-integrity .claude/skills/vdjdb-build-integrity && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
vdjdb-build-integrity
GitHub stars
157
Token cost
~1.9k tokens
SKILL.md length
951 words
Files
1
Skills in repo
8
Repo updated
First seen
Licence
Custom licence

At a glance

Validate VDJdb build code, CI, output contracts and release promotions against a released corpus.

  • Dependency upgrades
  • SKILL.md covers Define the candidate, Test the affected contracts, Promote the tested tree and Choose assessment scope
  • Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
  • Integration audits and release orchestration

What it does

Vdjdb Build Integrity is an agent skill from antigenomics/vdjdb-db. Validate VDJdb build code, CI, output contracts and release promotions against a released corpus. Use for build changes, dependency upgrades, integration audits and release orchestration; route manual source extraction and curation decisions to the curation skills.

Its SKILL.md is about 1.9k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Writing & Content. The repository describes itself as: Git-based antigen specificity database storage & management.

When your agent uses it

  • Dependency upgrades
  • Integration audits and release orchestration
  • Route manual source extraction and curation decisions to the curation skills

Example prompts

  • “/vdjdb-build-integrity”

What it can do on your machine

Read from SKILL.md and the folder at commit db9f359. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Vdjdb Build Integrity loads about 1.9k tokens when it runs. Until then it costs about 72 tokens; SKILL.md has 951 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~72
When it runs · the whole SKILL.md, loaded when a task matches
~1.9k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Its licence (Custom licence) doesn't allow us to republish the file, so here is its outline and opening line. It has 951 words (~1,893 tokens).

“Read repository AGENTS.md, source authorities, build and release, outputs and build integrity. Read docs/denoising.md before motif changes. Inspect the current local roadmap and worktree before starting; preserve existing source work and unresolved follow-ups.”

— opening of SKILL.md by antigenomics, Custom licence
name
vdjdb-build-integrity

Read the full SKILL.md on GitHub

Files

Just SKILL.md in skills/vdjdb-build-integrity of antigenomics/vdjdb-db.

Open the folder on GitHubat commit db9f359

Compare with similar skills

Vdjdb Build Integrity next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Vdjdb Build Integrity compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Vdjdb Build Integrity this skillantigenomics/vdjdb-db157—~1.9kAutomated safety check: PassCustom licence
Socialcoreyhaines31/marketingskills54k4 repos~4.5kAutomated safety check: PassMIT
HumanizerAzure-Samples/interview-coach-agent-framework17338 repos~5.8kAutomated safety check: PassMIT
Avoid AI Writingconorbronsdon/avoid-ai-writing4.9k3 repos~8.1kAutomated safety check: PassMIT
JavaScript Concept Fact Checkerleonardomso/33-js-concepts67k1 repos~5kAutomated safety check: PassMIT
User-Facing Text Cleanupguillaumemeyer/watermarks-remover24k—~3.5kAutomated safety check: PassMIT

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More from antigenomics/vdjdb-db

All 8 skills in this repo
  • Vdjdb Publish

    antigenomics/vdjdb-db

    Publish proofread VDJdb chunks through dev, reconcile publication issues, preserve record identity, keep validation changes separate, and close completed imports while tracking unresolved…

    157 GitHub stars~2k tokensUpdated today
    Auto-check passed
  • Vdjdb Duplicates

    antigenomics/vdjdb-db

    Review repeated paired receptor-pMHC observations and metadata synonyms within and across VDJdb publications, preserving distinct experiments and reports.

    157 GitHub stars~1.8k tokensUpdated today
    Auto-check passed
  • Vdjdb Extract

    antigenomics/vdjdb-db

    Extract TCR:pMHC specificity records from raw submission sources - supplementary XLS/CSV tables, PDF manuscripts, 10x Genomics contig and clonotype files, AIRR Rearrangement TSVs, Adaptive ImmunoSEQ…

    157 GitHub stars~1.5k tokensUpdated today
    Auto-check passed
  • Vdjdb Harmonize

    antigenomics/vdjdb-db

    Canonicalise antigen.gene and antigen.species in a VDJdb chunk against the epitope dictionary and the gene and species alias tables, detect spurious values (UniProt descriptions, "[species]"…

    157 GitHub stars~876 tokensUpdated today
    Auto-check passed
  • Vdjdb Proofread

    antigenomics/vdjdb-db

    Validate a VDJdb chunk with vdjdb qc and vdjdb submission, explain every finding with a specific suggested fix and the authority behind it, resolve method-field and MHC problems the rules cannot…

    157 GitHub stars~1.5k tokensUpdated today
    Auto-check passed
  • Vdjdb Structures

    antigenomics/vdjdb-db

    Extract and proofread deposited TCR-pMHC observations with the local tcren pipeline, then update the PDB aggregate chunk.

    157 GitHub stars~1.3k tokensUpdated today
    Auto-check passed

Questions about Vdjdb Build Integrity

What does Vdjdb Build Integrity do?

Validate VDJdb build code, CI, output contracts and release promotions against a released corpus. Vdjdb Build Integrity is an agent skill from antigenomics/vdjdb-db. Validate VDJdb build code, CI, output contracts and release promotions against a released corpus.

When should I use Vdjdb Build Integrity?

Vdjdb Build Integrity fits situations like: dependency upgrades; integration audits and release orchestration; route manual source extraction and curation decisions to the curation skills.

How do I install Vdjdb Build Integrity in Claude Code?

Run `npx skills add antigenomics/vdjdb-db --skill vdjdb-build-integrity -a claude-code`. Or copy the skill folder (skills/vdjdb-build-integrity in antigenomics/vdjdb-db) into .claude/skills/vdjdb-build-integrity in your project. Claude Code loads it when a task matches its description.

How do I install Vdjdb Build Integrity in Codex?

Run `npx skills add antigenomics/vdjdb-db --skill vdjdb-build-integrity -a codex`. Or copy the skill folder (skills/vdjdb-build-integrity in antigenomics/vdjdb-db) into .agents/skills/vdjdb-build-integrity in your project. Codex loads it when a task matches its description.

Can I use Vdjdb Build Integrity in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add antigenomics/vdjdb-db --skill vdjdb-build-integrity -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/vdjdb-build-integrity, .gemini/skills/vdjdb-build-integrity, .github/skills/vdjdb-build-integrity and .opencode/skills/vdjdb-build-integrity in your project.

What does Vdjdb Build Integrity need to run?

SKILL.md names no scripts, command-line tools or credentials: Vdjdb Build Integrity is instructions for the agent only.

Does Vdjdb Build Integrity access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Vdjdb Build Integrity safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Vdjdb Build Integrity use?

Vdjdb Build Integrity has a licence file (the repository's licence) that doesn't match a standard licence. Read it on GitHub before reusing the skill.

How many tokens does Vdjdb Build Integrity use?

About 1.9k tokens (SKILL.md is roughly 7.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Vdjdb Build Integrity?

Skills that share tags, products or a category with Vdjdb Build Integrity: Social (coreyhaines31/marketingskills, 54k stars), Humanizer (Azure-Samples/interview-coach-agent-framework, 173 stars), Avoid AI Writing (conorbronsdon/avoid-ai-writing, 4.9k stars) and JavaScript Concept Fact Checker (leonardomso/33-js-concepts, 67k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Vdjdb Build Integrity?

antigenomics (a GitHub organization) maintains it in antigenomics/vdjdb-db, which has 157 GitHub stars. The repository holds 8 skills in this directory. The repository was last updated on October 10, 2026.

Source: antigenomics/vdjdb-db on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.