InternScience/scp agent skills, page 2

Retrieve phenotype information from Monarch Initiative using HPO (Human Phenotype Ontology) IDs to understand disease manifestations.

InternScience/scp

Search for similar protein sequences in UniProt Swiss-Prot database using BLAST to identify homologous proteins and functional relationships.

InternScience/scp

Extract laboratory protocols from PDF documents using Thoth-Plan to convert experimental procedures into structured text.

InternScience/scp

Generate detailed laboratory protocols from natural language descriptions using AI, producing step-by-step experimental procedures ready for lab execution.

InternScience/scp

Convert laboratory protocols to executable JSON format using Thoth-OP for automated lab equipment control.

InternScience/scp

Search PubChem database using SMILES strings to retrieve compound information and chemical properties.

InternScience/scp

Search PubMed database for scientific articles and publications to retrieve biomedical literature.

InternScience/scp

Query IGVF Catalog for regulatory element–gene associations within a genomic region, including association scores, element types, and biosample context.

InternScience/scp

Search scientific literature and research papers using FlowSearch to find relevant academic articles and publications.

InternScience/scp

Calculate the freezing point temperature of seawater from absolute salinity and pressure using GSW thermodynamic equations.

InternScience/scp

Calculate sound speed in seawater from practical salinity, temperature, and pressure using the Gibbs Seawater Oceanographic Toolbox.

InternScience/scp

Process seismic waveform data including reading MinISEED/SAC files, extracting metadata, and visualizing earthquake signals.

InternScience/scp

Convert SMILES strings to CAS registry numbers using material informatics tools to identify chemical substances.

InternScience/scp

Analyze protein-protein interaction enrichment using STRING database to identify functional networks and pathway associations.

InternScience/scp

Retrieve gene expression data from TCGA (The Cancer Genome Atlas) to analyze cancer-specific expression patterns.

InternScience/scp

Retrieve protein sequences and functional information from UniProt database by protein name, enabling protein analysis and bioinformatics workflows.

InternScience/scp

Convert physical quantities and units at nanoscale for materials science and nanotechnology applications.

InternScience/scp

Query ClinGen Allele Registry to map variant rsID to identifiers in other databases (ClinVar, gnomAD, COSMIC, UniProtKB, OMIM, etc.).

InternScience/scp

Query dbSNP + NCBI Gene to get variant genomic position (chromosome, coordinates, ref/alt alleles, mutation type) and associated gene coordinates.

InternScience/scp

Query PharmGKB (clinPGx) for pharmacogenomic clinical annotations — how a variant affects drug response, dosing, and adverse reactions.

InternScience/scp

Query gnomAD for variant allele frequency across populations.

InternScience/scp

Assess wind energy potential and perform site analysis using atmospheric science calculations.

InternScience/scp

Query NCBI ClinVar for variant clinical pathogenicity classification (Pathogenic/Benign/VUS), review status and associated diseases.

InternScience/scp

Query FAVOR API for variant functional prediction scores (CADD, SIFT, PolyPhen, REVEL, etc.) and gene annotation.

InternScience/scp

Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases.

InternScience/scp