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Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases.
Install Variant Gwas Associations
$ npx skills add InternScience/scp --skill variant-gwas-associations -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install InternScience/scp variant-gwas-associations --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/InternScience/scp.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/variant-gwas-associations .claude/skills/variant-gwas-associations && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "variant-gwas-associations" agent skill from https://github.com/InternScience/scp/tree/main/skills/variant-gwas-associations into .claude/skills/variant-gwas-associations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "variant-gwas-associations", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/InternScience/scp/tree/main/skills/variant-gwas-associationsType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add InternScience/scp --skill variant-gwas-associations -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install InternScience/scp variant-gwas-associations --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/InternScience/scp.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/variant-gwas-associations .agents/skills/variant-gwas-associations && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "variant-gwas-associations" agent skill from https://github.com/InternScience/scp/tree/main/skills/variant-gwas-associations into .agents/skills/variant-gwas-associations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "variant-gwas-associations", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add InternScience/scp --skill variant-gwas-associations -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install InternScience/scp variant-gwas-associations --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/InternScience/scp.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/variant-gwas-associations .cursor/skills/variant-gwas-associations && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "variant-gwas-associations" agent skill from https://github.com/InternScience/scp/tree/main/skills/variant-gwas-associations into .cursor/skills/variant-gwas-associations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "variant-gwas-associations", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/InternScience/scp.git --path skills/variant-gwas-associations--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add InternScience/scp --skill variant-gwas-associations -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install InternScience/scp variant-gwas-associations --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/InternScience/scp.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/variant-gwas-associations .gemini/skills/variant-gwas-associations && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "variant-gwas-associations" agent skill from https://github.com/InternScience/scp/tree/main/skills/variant-gwas-associations into .gemini/skills/variant-gwas-associations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "variant-gwas-associations", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install InternScience/scp variant-gwas-associationsInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add InternScience/scp --skill variant-gwas-associations -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/InternScience/scp.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/variant-gwas-associations .github/skills/variant-gwas-associations && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "variant-gwas-associations" agent skill from https://github.com/InternScience/scp/tree/main/skills/variant-gwas-associations into .github/skills/variant-gwas-associations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "variant-gwas-associations", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add InternScience/scp --skill variant-gwas-associations -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install InternScience/scp variant-gwas-associations --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/InternScience/scp.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/variant-gwas-associations .opencode/skills/variant-gwas-associations && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "variant-gwas-associations" agent skill from https://github.com/InternScience/scp/tree/main/skills/variant-gwas-associations into .opencode/skills/variant-gwas-associations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "variant-gwas-associations", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
variant-gwas-associations- GitHub stars
- 170
- Used in
- 1 other repo
- Token cost
- ~422 tokens
- SKILL.md length
- 10 words
- Files
- 1
- Skills in repo
- 73
- Repo updated
- First seen
- Licence
- MIT
At a glance
Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases.
- Tasks that involve Statistics
- Reaches ebi.ac.uk
What it does
Variant Gwas Associations is an agent skill from InternScience/scp. Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases.
Its SKILL.md is about 420 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Data & Analytics, covering Statistics. The licence is MIT.
When your agent uses it
- Tasks that involve Statistics
Example prompts
- “/variant-gwas-associations”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit cea5398. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md (its code samples are tex and python).
From the folder's file list and the shell code blocks in SKILL.md.
Network
Hosts in commands or code, which the agent is likely to contact:
ebi.ac.uk
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Variant Gwas Associations loads about 422 tokens when it runs. Until then it costs about 39 tokens; SKILL.md has 10 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
The full file from InternScience/scp at commit cea5398, republished under its MIT licence (© InternScience). 10 words, ~422 tokens.
Download SKILL.mdSave it as
.claude/skills/variant-gwas-associations/SKILL.md (or your agent's skills folder).- name
- variant-gwas-associations
- description
- Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases.
- license
- MIT license
- metadata.skill-author
- PJLab
EBI GWAS Catalog — Trait Associations
Usage
Tool Description
Query EBI GWAS Catalog REST API to get GWAS association information for a variant.
Database: EBI GWAS Catalog (https://www.ebi.ac.uk/gwas/)
API: GET https://www.ebi.ac.uk/gwas/rest/api/associations/search/findByRsId?rsId={rsid}
Args:
rs_id (str): dbSNP rsID (e.g. "rs7412")
Return:
associations (list): Each contains pvalue, risk allele, trait/disease, source study.Query Example
import requests
rs_id = "rs7412"
url = f"https://www.ebi.ac.uk/gwas/rest/api/associations/search/findByRsId?rsId={rs_id}"
resp = requests.get(url, headers={"Accept": "application/json"}, timeout=30).json()
associations = resp.get("_embedded", {}).get("associations", [])
print(f"[GWAS Catalog] {rs_id} 关联数: {len(associations)}")
for i, assoc in enumerate(associations[:10]): # 展示前10条
pval = assoc.get("pvalue", "N/A")
beta = assoc.get("betaNum", "N/A")
risk_freq = assoc.get("riskFrequency", "N/A")
# 获取 trait 名称需要额外请求 _links
trait_link = assoc.get("_links", {}).get("efoTraits", {}).get("href", "")
if trait_link:
trait_resp = requests.get(trait_link, headers={"Accept": "application/json"}, timeout=15).json()
traits = [t.get("trait", "") for t in trait_resp.get("_embedded", {}).get("efoTraits", [])]
else:
traits = ["unknown"]
print(f" [{i+1}] p={pval}, beta={beta}, traits={traits}")© InternScience, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Files
Just SKILL.md in skills/variant-gwas-associations of InternScience/scp.
Open the folder on GitHubat commit cea5398
Used in 2 other repositories
We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in InternScience/scp, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Variant Gwas Associations next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Variant Gwas Associations this skillInternScience/scp | 170 | 1 repos | ~422 | Automated safety check: Pass | MIT | |
| Sandbox Benchvercel/next.js | 143k | — | ~4.1k | Automated safety check: Pass | MIT | |
| Statistical Analysisspacering-net/codeg | 3.9k | 3 repos | ~5k | Automated safety check: Pass | MIT | |
| StatsmodelszLanqing/codex-claude-academic-skills | 4.7k | 15 repos | ~4.9k | Automated safety check: Pass | BSD-3-Clause | |
| AI Daily DigestvigorX777/ai-daily-digest | 1.6k | — | ~1.3k | Automated safety check: Pass | None | |
| Statistical Powerspacering-net/codeg | 3.9k | 1 repos | ~3.6k | Automated safety check: Notes | MIT |
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Related
Categories
Questions about Variant Gwas Associations
What does Variant Gwas Associations do?
Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases. Variant Gwas Associations is an agent skill from InternScience/scp. Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases.
When should I use Variant Gwas Associations?
Variant Gwas Associations fits situations like: tasks that involve Statistics.
How do I install Variant Gwas Associations in Claude Code?
Run `npx skills add InternScience/scp --skill variant-gwas-associations -a claude-code`. Or copy the skill folder (skills/variant-gwas-associations in InternScience/scp) into .claude/skills/variant-gwas-associations in your project. Claude Code loads it when a task matches its description.
How do I install Variant Gwas Associations in Codex?
Run `npx skills add InternScience/scp --skill variant-gwas-associations -a codex`. Or copy the skill folder (skills/variant-gwas-associations in InternScience/scp) into .agents/skills/variant-gwas-associations in your project. Codex loads it when a task matches its description.
Can I use Variant Gwas Associations in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add InternScience/scp --skill variant-gwas-associations -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/variant-gwas-associations, .gemini/skills/variant-gwas-associations, .github/skills/variant-gwas-associations and .opencode/skills/variant-gwas-associations in your project.
What does Variant Gwas Associations need to run?
SKILL.md names no scripts, command-line tools or credentials: Variant Gwas Associations is instructions for the agent only. Our summary lists: Python 3.
Does Variant Gwas Associations access the network?
SKILL.md names 1 domain. In commands or code: ebi.ac.uk; the agent is likely to contact it when it follows the instructions. This is read from the text; nothing was executed.
Is Variant Gwas Associations safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Variant Gwas Associations use?
Variant Gwas Associations is published under the MIT licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.
How many tokens does Variant Gwas Associations use?
About 422 tokens (SKILL.md is roughly 1.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Variant Gwas Associations?
Skills that share tags, products or a category with Variant Gwas Associations: Sandbox Bench (vercel/next.js, 143k stars), Statistical Analysis (spacering-net/codeg, 3.9k stars), Statsmodels (zLanqing/codex-claude-academic-skills, 4.7k stars) and AI Daily Digest (vigorX777/ai-daily-digest, 1.6k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Variant Gwas Associations?
InternScience (a GitHub organization) maintains it in InternScience/scp, which has 170 GitHub stars. The repository holds 73 skills in this directory. The repository was last updated on June 3, 2026.
Source: InternScience/scp on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.