Python agent skills, page 65

Build Sankey, alluvial, river, and CONSORT-style flow diagrams to visualize cohort transitions, cell-state changes, or pipeline filtering using ggalluvial, networkD3, plotly, and consort.

GPTomics/bioSkills

Build interactive HTML/web visualizations with plotly (Python/R), bokeh (Python), and gganimate/plotly frames for animation, with awareness of current Kaleido static-export model (post-orca-EOL)…

GPTomics/bioSkills

Build publication-quality figures with matplotlib using the object-oriented Figure/Axes API, constrainedlayout, rcParams customization, TrueType (Type-42) font embedding for journal submission, and…

GPTomics/bioSkills

Compose multi-panel publication figures with patchwork, cowplot, gridExtra (R), or matplotlib GridSpec/subfigures (Python) including shared axes/legends/guides collection, panel labels in…

GPTomics/bioSkills

Visualize biological networks (PPI, gene-regulatory, co-expression, pathway) with layout algorithm choice (ForceAtlas2, Fruchterman-Reingold, Kamada-Kawai, hive plots), edge bundling…

GPTomics/bioSkills

Build OncoPrint and co-mutation matrix plots from somatic-variant cohorts using ComplexHeatmap, maftools, and comut.py with alteration-type stacking, sample ordering by mutational burden…

GPTomics/bioSkills

Build sequence logos from aligned DNA, RNA, or protein motifs using ggseqlogo (R), Logomaker (Python), or WebLogo with explicit bits vs probability encoding, background-frequency correction, custom…

GPTomics/bioSkills

Add p-value brackets, significance asterisks, and effect-size annotations to distribution plots using ggpubr, ggsignif, and statannotations with correct test selection (parametric vs non-parametric…

GPTomics/bioSkills

Build UpSet plots to visualize set intersections beyond 4 sets (where Venn fails) using ComplexUpset (modern, ggplot2-grammar) or the unmaintained UpSetR, with explicit cardinality vs degree…

GPTomics/bioSkills

Generate consensus sequences and manage reference files using samtools.

GPTomics/bioSkills

Query UniProt's REST API (post-2022 endpoint at rest.uniprot.org) for protein sequences, annotations, GO terms, cross-references, ID mappings, and proteomes.

GPTomics/bioSkills

Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data.

GPTomics/bioSkills

Query and download from NCBI Gene Expression Omnibus (GEO) and EMBL-EBI's BioStudies/ArrayExpress mirror.

GPTomics/bioSkills

Generate pileup data for variant calling using samtools mpileup and pysam.

GPTomics/bioSkills

Running experiments out of the data warehouse instead of via dedicated experiment platforms.

rampstackco/claude-skills

Use this before writing Python code, creating Python scripts, modifying Python files, or when user asks to "write python", "create a python script", "implement in python".

archibate/dotfiles-opencode

How to review code and Pull Requests in the Eventyay repository against canonical instructions.

fossasia/eventyay

Production-ready genomics and epigenomics data processing for BixBench questions.

wu-yc/LabClaw

Analyze a supplied scientific-figure image (PNG, JPEG, TIFF, or a rasterized figure), identify its chart type and visual grammar, infer axes and styling, and deliver a close Python/Matplotlib or…

franklee16/academic-research-skills

Scaffold a new Polylith workspace with poly create workspace.

DavidVujic/python-polylith

Provides the cli-anything-iterm2 commands — the only way to actually send text to iTerm2 sessions, read live terminal output and scrollback history, manage windows/tabs/split panes, run tmux -CC…

HKUDS/CLI-Anything

Stateful LLDB debugging via LLDB Python API. An agent skill from HKUDS/CLI-Anything.

HKUDS/CLI-Anything

AI-powered video captioning — transcribe speech, optimize/translate subtitles, and burn them into video via the stable VideoCaptioner backend.

HKUDS/CLI-Anything

Python CLI harness for WireMock HTTP mock server administration

HKUDS/CLI-Anything

Capability-based multi-tool matrix for 3D modeling, CAD, point clouds, rendering, GPU debugging, and fabrication.

HKUDS/CLI-Anything

Capability-based multi-tool matrix for game development: engine, 3D/2D/audio assets, AI-generated assets, agent playtesting, packaging, store publishing, and telemetry.

HKUDS/CLI-Anything

Capability-based multi-tool matrix for research, note-taking, document authoring, and publishing.

HKUDS/CLI-Anything

Setting up or installing into a Python environment. An agent skill from asgeirtj/system_prompts_leaks.

asgeirtj/system_prompts_leaks

Azure Container Registry SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Cosmos DB SDK for Python (NoSQL API). An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Tables SDK for Python (Storage and Cosmos DB). An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Event Grid SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Identity SDK for Python authentication. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Key Vault SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Event Hubs SDK for Python streaming. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Monitor Query SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Service Bus SDK for Python messaging. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Blob Storage SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Data Lake Storage Gen2 SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Storage File Share SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Guides and best practices for working with Neon Serverless Postgres.

aiskillstore/marketplace

Azure AI Transcription SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure App Configuration SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure API Center Management SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Fabric Management SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Monitor Ingestion SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure Monitor OpenTelemetry Exporter for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure AI Search SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace