Python agent skills, page 64

Assess SSL/TLS server configurations using the sslyze Python scanning library to evaluate supported protocol versions, cipher suite strength, certificate chain validation, HSTS enforcement, OCSP…

mukul975/Anthropic-Cybersecurity-Skills

Use YARA pattern-matching rules to hunt for malware, suspicious files, and indicators of compromise across filesystems and memory dumps.

mukul975/Anthropic-Cybersecurity-Skills

Neo4j Python Driver v6 — driver lifecycle, executequery, managed and explicit transactions, async (AsyncGraphDatabase), result handling, data type mapping, error handling, UNWIND batching…

neo4j-contrib/neo4j-skills

Build discounted cash flow valuation workbooks in Excel. An agent skill from Luciole-Studio/Misaka-Agent.

Luciole-Studio/Misaka-Agent

Compare two implementations of the same thing — a port (R↔Python↔Stata), a reimplementation, a replication package, a refactor, or a new version against the old — so that agreement means something.

pedrohcgs/claude-code-my-workflow

AI가 만든 모든 코드 변경사항을 reviews 폴더에 기록하고 간단한 HTML 뷰어로 웹 브라우저에서 실시간 확인할 수 있습니다.

bear2u/my-skills

Setting up Python environments for Streamlit apps. An agent skill from iusztinpaul/designing-real-world-ai-agents-workshop.

iusztinpaul/designing-real-world-ai-agents-workshop

A skill your agent uses when writing, fixing, editing, or refactoring Python functions.

ertugrul-dmr/clean-code-skills

Generate AI videos using ByteDance Seedance. An agent skill from freestylefly/canghe-skills.

freestylefly/canghe-skills

Use OVITO or the OVITO Python module for atomistic visualization and analysis of structures and trajectories, including rendering, common-neighbor/PTM structure classification, coordination/RDF…

JCLiuGroup/AI-Computational-Chemist

PydanticAI — Typed AI Agents in Python workflow skill. An agent skill from diegosouzapw/awesome-omni-skills.

diegosouzapw/awesome-omni-skills

Scrapes LinkedIn job postings using the JobSpy library (python-jobspy).

gooseworks-ai/goose-skills

Start here for Python, wxPython, desktop app, NVDA add-on and accessibility tooling work.

Community-Access/accessibility-agents

Crawl CNKI journal paper metadata with the local Python crawler and save to PostgreSQL.

Drchronx/ai-agent-research-starter-kit

Patterns for SQLite databases in Python projects - state management, caching, and async operations.

aiskillstore/marketplace

Use as the lead skill when Python tests must expose scheduler/interleaving bugs in asyncio, threading, queues, workers, databases, caches, or mixed-concurrency code

dzhalaevd/Donatello

The heavy, infrequent (~monthly) maintenance pass for the wiki — a superset of lint.

HurricaHjz/second-yourself

Submit recoverable SSH-direct research Runs with live progress cards and model-free monitoring.

xuzhougeng/wisp-science

PreToolUse security-anti-pattern hook for Claude Code. An agent skill from alirezarezvani/claude-skills.

alirezarezvani/claude-skills

A skill your agent uses for web scraping, crawling, document extraction, API parsing, or building validation-heavy data pipelines using Firecrawl or local Python scripts.

alirezarezvani/claude-skills

Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results.

aipoch/medical-research-skills

Build LangChain (Python) tools using Claude Code's fail-closed design pattern — unified name/schema/security/execution in one class, with automatic three-layer execution (validate → permission →…

simbajigege/book2skills

Regenerates SDK model constants from the live QVAC registry and opens a [mod] PR.

tetherto/qvac

Build professional command-line interfaces in Python, Go, and Rust using modern frameworks like Typer, Cobra, and clap.

ancoleman/ai-design-components

Debugging workflows for Python (pdb, debugpy), Go (delve), Rust (lldb), and Node.js, including container debugging (kubectl debug, ephemeral containers) and production-safe debugging techniques with…

ancoleman/ai-design-components

Generate comprehensive technical documentation including API docs (OpenAPI/Swagger), code documentation (TypeDoc/Sphinx), documentation sites (Docusaurus/MkDocs), Architecture Decision Records…

ancoleman/ai-design-components

Strategic guidance for choosing and implementing testing approaches across the test pyramid.

ancoleman/ai-design-components

RAG-specific best practices for LlamaIndex, ChromaDB, and Celery workers.

llama-farm/llamafarm

Universal Runtime best practices for PyTorch inference, Transformers models, and FastAPI serving.

llama-farm/llamafarm

Shared Python best practices for LlamaFarm. An agent skill from llama-farm/llamafarm.

llama-farm/llamafarm

Server-specific best practices for FastAPI, Celery, and Pydantic.

llama-farm/llamafarm

Sequence-based deep learning for ATAC-seq using chromBPNet, BPNet, scBasset, or Enformer.

GPTomics/bioSkills

Map nucleosome center positions, occupancy, and fuzziness from ATAC-seq fragment-size patterns using NucleoATAC, ATACseqQC, DANPOS3, or scprinter.

GPTomics/bioSkills

Bulk-query Ensembl BioMart (and other BioMart instances) for cross-database ID mapping, gene/transcript/exon coordinates, and ortholog tables.

GPTomics/bioSkills

Annotates ChIP-seq peaks to genomic features, nearest genes, ENCODE candidate cis-regulatory elements (cCREs), and regulatory domains.

GPTomics/bioSkills

Identifies super-enhancers from H3K27ac, MED1, or BRD4 ChIP-seq using ROSE, ROSE2, LILY, HOMER -style super, and ENCODE dELS cross-referencing.

GPTomics/bioSkills

Queries myvariant.info BioThings aggregator for ClinVar, gnomAD, dbSNP, dbNSFP, COSMIC, CADD, and CIViC annotations in batched, version-tracked requests.

GPTomics/bioSkills

Predict RBP binding from RNA sequence using deep learning models (RBPNet sequence-to-signal, RNAProt RNN, GraphProt2 GCN with structure, DeepCLIP, DeepRiPe multi-modal CNN) for variant-effect…

GPTomics/bioSkills

Annotate copy number variant segments with overlapping genes, dosage-sensitivity scores, cancer driver databases, population frequencies, and clinical-variant content.

GPTomics/bioSkills

Detect somatic and germline copy number variants from targeted, exome, and whole-genome sequencing with CNVkit, a read-depth caller that combines on-target and off-target (antitarget) coverage.

GPTomics/bioSkills

Normalize read-depth copy-ratio profiles and segment them into copy-number regions using circular binary segmentation (CBS, DNAcopy), hidden Markov models, HaarSeg, and fused-lasso methods.

GPTomics/bioSkills

Identify recurrent and driver copy number alterations across a tumor cohort with GISTIC2 (G-score, Ziggurat deconstruction, focal vs broad/arm-level analysis, q-values from permutation) and quantify…

GPTomics/bioSkills

Batch effect correction for CRISPR screens covering ComBat empirical-Bayes, RUV, SVA, control-sgRNA normalization, and the model-based alternative of including batch as a covariate in MAGeCK MLE or…

GPTomics/bioSkills

Corrects the gene-independent copy-number artifact in CRISPR-Cas9 screens (Aguirre 2016 / Munoz 2016 Cancer Discov) where amplified loci appear essential from DNA-damage burden of simultaneous cuts.

GPTomics/bioSkills

Runs JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens; Allen et al 2019 Genome Research) which models per-sgRNA log-fold-change as the product of a treatment-dependent gene-essentiality term…

GPTomics/bioSkills

Analyzes single-cell pooled CRISPR screens (Perturb-seq, CROP-seq, Perturb-CITE-seq, ECCITE-seq, multiome) where each cell carries an sgRNA and a scRNA-seq / surface-protein / chromatin readout.

GPTomics/bioSkills

Build circular genome visualizations using circlize (R), pyCirclize (Python), or Circos (Perl CLI) with ideogram tracks, multi-data tracks (scatter, histogram, heatmap), chord/link arcs for…

GPTomics/bioSkills

Plot per-group distributions of continuous data using boxplots, violins, beeswarms, quasirandom jitter, and raincloud plots with sample-size honesty (Weissgerber 2015), KDE-bandwidth awareness, and…

GPTomics/bioSkills