Role
Best agent skills for researchers, page 135
Skills for researchers, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 6433 | 6433.Bioconductor Mudata Save MultiAssayExperiments to h5mu files supported by muon and mudata. | bioMate-AI/ | 804 | — | ~1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6434 | 6434.Bioconductor Nnsvg Method for scalable identification of spatially variable genes (SVGs) in spatially-resolved transcriptomics data. | bioMate-AI/ | 804 | — | ~925 | Automated safety check: Pass | Unknown | 3 mo ago |
| 6435 | 6435.Bioconductor Ompbam This packages provides C++ header files for developers wishing to create R packages that processes BAM files. | bioMate-AI/ | 804 | — | ~993 | Automated safety check: Pass | Unknown | 3 mo ago |
| 6436 | PhIPData defines an S4 class for phage-immunoprecipitation sequencing (PhIP-seq) experiments. | bioMate-AI/ | 804 | — | ~1.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6437 | 6437.Bioconductor Rblast Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6438 | This package performs differential pattern analysis for Ribo-seq data. | bioMate-AI/ | 804 | — | ~1.8k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6439 | 6439.Bioconductor Scanmir A set of tools for working with miRNA affinity models (KdModels), efficiently scanning for miRNA binding sites, and predicting target repression. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6440 | The package comprises a set of pretrained machine learning models to predict basic immune cell types. | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6441 | 6441.Bioconductor Scarray Provides large-scale single-cell omics data manipulation using Genomic Data Structure (GDS) files. | bioMate-AI/ | 804 | — | ~968 | Automated safety check: Pass | Unknown | 3 mo ago |
| 6442 | 6442.Bioconductor Scater A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization. | bioMate-AI/ | 804 | — | ~4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6443 | 6443.Bioconductor Sccomp A robust and outlier-aware method for testing differential tissue composition from single-cell data. | bioMate-AI/ | 804 | — | ~1.9k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6444 | We present a statistical simulator, scDesign3, to generate realistic single-cell and spatial omics data, including various cell states, experimental designs, and feature modalities, by learning… | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6445 | 6445.Bioconductor Scran Implements miscellaneous functions for interpretation of single-cell RNA-seq data. | bioMate-AI/ | 804 | — | ~4.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6446 | A post hoc cell type classification tool to fine-tune cell type annotations generated by any cell type classification procedure with semi-supervised learning algorithm AdaSampling technique. | bioMate-AI/ | 804 | — | ~818 | Automated safety check: Pass | Unknown | 3 mo ago |
| 6447 | 6447.Bioconductor Sgcp SGC is a semi-supervised pipeline for gene clustering in gene co-expression networks. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6448 | 6448.Bioconductor Simbu SimBu can be used to simulate bulk RNA-seq datasets with known cell type fractions. | bioMate-AI/ | 804 | — | ~1.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6449 | Image segmentation is the process of identifying the borders of individual objects (in this case cells) within an image. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6450 | Defines a S4 class for storing data from single-cell experiments. | bioMate-AI/ | 804 | — | ~4.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6451 | SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6452 | The analysis and visualization of alternative splicing (AS) events from RNA sequencing data remains challenging. | bioMate-AI/ | 804 | — | ~2.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6453 | SpotClean is a computational method to adjust for spot swapping in spatial transcriptomics data. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6454 | Spatially-aware quality control (QC) software for both spot-level and artifact-level QC in spot-based spatial transcripomics, such as 10x Visium. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6455 | 6455.Bioconductor Standr standR is an user-friendly R package providing functions to assist conducting good-practice analysis of Nanostring's GeoMX DSP data. | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6456 | Generate SuperSigs (supervised mutational signatures) from single nucleotide variants in the cancer genome. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6457 | syntenet can be used to infer synteny networks from whole-genome protein sequences and analyze them. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6458 | 6458.Bioconductor Tanggle Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. | bioMate-AI/ | 804 | — | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6459 | This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. | bioMate-AI/ | 804 | — | ~1.8k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6460 | Variance-stabilizing transformations help with the analysis of heteroskedastic data (i.e., data where the variance is not constant, like count data). | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6461 | 6461.Bioconductor Treekor treekoR is a novel framework that aims to utilise the hierarchical nature of single cell cytometry data to find robust and interpretable associations between cell subsets and patient clinical end… | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6462 | 6462.Bioconductor Voyager SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial single-cell genomics data. | bioMate-AI/ | 804 | — | ~1.6k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6463 | 6463.Bioconductor Zenith Zenith performs gene set analysis on the result of differential expression using linear (mixed) modeling with dream by considering the correlation between gene expression traits. | bioMate-AI/ | 804 | — | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6464 | 6464.Entity Optimizer A skill your agent uses when the user asks to "optimize entity presence", reconcile an entity identity, or update canonical Knowledge Graph facts; audits and maintains machine-facing identity… | aiskillstore/ | 433 | — | ~2.2k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 6465 | 面向真实业务决策的多平台事实核验 Skill。正式支持深知晓、深知晓（深度溯源）、豆包、腾讯元宝、DeepSeek 和通义千问，按用户输入动态选择 N≥1 个平台。完整采集原回答、引用、截图与页面存证，结构化比较关键事实，按需使用可信搜索逐点核验权威证据，并评估各平台表现。权威答案是核验产物之一，原始证据、冲突与证据边界全程可追溯。基础采集与对比无需 API… | aiskillstore/ | 433 | — | ~3.8k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 6466 | Multi-source literature search, citation verification, MeSH search strategy, citation file management (.nbib/.ris/.bib conversion), and reference management (BibTeX, related articles, ID conversion)… | aiskillstore/ | 433 | — | ~1.1k | Automated safety check: Pass | No licence | yesterday |
| 6467 | 6467.Nature Reviewer Simulate a Nature-style reviewer assessment from the referee perspective rather than an author rebuttal. | aiskillstore/ | 433 | — | ~1.5k | Automated safety check: Pass | No licence | yesterday |
| 6468 | Codex adaptation of the OpenClaw Medical Skills library. An agent skill from aiskillstore/marketplace. | aiskillstore/ | 433 | — | ~2.1k | Automated safety check: Pass | No licence | yesterday |
| 6469 | 6469.Para Skill PARA method knowledge management for Obsidian vaults. An agent skill from aiskillstore/marketplace. | aiskillstore/ | 433 | — | ~2k | Automated safety check: Pass | MIT | yesterday |
| 6470 | 6470.Querying Logseq Data Expert in building Datalog queries for Logseq DB graphs. An agent skill from aiskillstore/marketplace. | aiskillstore/ | 433 | — | ~1.9k | Automated safety check: Pass | No licence | yesterday |
| 6471 | Work with a user's Semantic Scholar account to read Research Feeds, inspect private Library folders, add papers to folders, and resolve Semantic Scholar paper records from identifiers such as arXiv… | aiskillstore/ | 433 | — | ~1k | Automated safety check: Pass | No licence | yesterday |
| 6472 | 6472.Alphafold A skill your agent uses when running AlphaFold2 predictions on custom protein sequences, validating designed sequences via self-consistency, predicting binder-target complexes, or interpreting AF2… | lamm-mit/ | 246 | — | ~1.1k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 6473 | 6473.Arxiv Search ArXiv for scientific preprints in biology, chemistry, and related fields | lamm-mit/ | 246 | — | ~495 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 6474 | 6474.Ase Atomic Simulation Environment (ASE) for computational materials science. | lamm-mit/ | 246 | — | ~1.5k | Automated safety check: Pass | LGPL-3.0 | 1 mo ago |
| 6475 | 6475.Blast Search NCBI BLAST for sequence homology and find similar sequences in biological databases | lamm-mit/ | 246 | — | ~758 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 6476 | 6476.Chembl Small-molecule drug lookup by exact drug name or ChEMBL ID. An agent skill from lamm-mit/scienceclaw. | lamm-mit/ | 246 | — | ~841 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 6477 | 6477.Clinical Guidelines ToolUniverse workflow — Clinical Guidelines. An agent skill from lamm-mit/scienceclaw. | lamm-mit/ | 246 | — | ~5k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 6478 | ToolUniverse workflow — Expression Data Retrieval. An agent skill from lamm-mit/scienceclaw. | lamm-mit/ | 246 | — | ~2.6k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 6479 | 6479.Gwas Drug Discovery ToolUniverse workflow — Gwas Drug Discovery. An agent skill from lamm-mit/scienceclaw. | lamm-mit/ | 246 | — | ~4.8k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 6480 | 6480.Gwas Trait To Gene ToolUniverse workflow — Gwas Trait To Gene. An agent skill from lamm-mit/scienceclaw. | lamm-mit/ | 246 | — | ~2.2k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
Explore related skills
Categories for researchers
Popular topics
- Bioinformatics1,146
- Citation management933
- Slides and decks807
- Web scraping776
- PDF773
- Translation699
- Markdown627
- Excel spreadsheets626
- Data analysis562
- Statistics541
- CSV and tabular files530
- Brand voice and tone512
- Social media posts509
- Academic paper search507
- Literature review482
- PowerPoint presentations442
- Data pipelines and ETL419
- Plain language and style rules419
- Data visualization417
- LaTeX414
- Deep research407
- Word documents402
- Reproducible research376
- Knowledge bases375
Products these skills work with
Other roles
- Developers39,105
- Frontend Developers7,075
- DevOps and SRE Engineers6,607
- Data Scientists5,833
- Designers4,873
- Marketers5,420
- SEO Specialists1,401
- Writers and Editors5,851
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- Founders and Solopreneurs6,359
- Students and Educators1,988
- Lawyers and Compliance Teams1,330
- Accountants and Finance Teams2,470