Statsmodels
zLanqing/codex-claude-academic-skills
Statistical models library for Python. An agent skill from zLanqing/codex-claude-academic-skills.
Python statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests.
$ npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install jaechang-hits/SciAgent-Skills statsmodels-statistical-modeling --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/jaechang-hits/SciAgent-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/biostatistics/statsmodels-statistical-modeling .claude/skills/statsmodels-statistical-modeling && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "statsmodels-statistical-modeling" agent skill from https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/biostatistics/statsmodels-statistical-modeling into .claude/skills/statsmodels-statistical-modeling/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "statsmodels-statistical-modeling", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/biostatistics/statsmodels-statistical-modelingType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install jaechang-hits/SciAgent-Skills statsmodels-statistical-modeling --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jaechang-hits/SciAgent-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/biostatistics/statsmodels-statistical-modeling .agents/skills/statsmodels-statistical-modeling && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "statsmodels-statistical-modeling" agent skill from https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/biostatistics/statsmodels-statistical-modeling into .agents/skills/statsmodels-statistical-modeling/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "statsmodels-statistical-modeling", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install jaechang-hits/SciAgent-Skills statsmodels-statistical-modeling --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jaechang-hits/SciAgent-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/biostatistics/statsmodels-statistical-modeling .cursor/skills/statsmodels-statistical-modeling && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "statsmodels-statistical-modeling" agent skill from https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/biostatistics/statsmodels-statistical-modeling into .cursor/skills/statsmodels-statistical-modeling/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "statsmodels-statistical-modeling", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/jaechang-hits/SciAgent-Skills.git --path skills/biostatistics/statsmodels-statistical-modeling--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install jaechang-hits/SciAgent-Skills statsmodels-statistical-modeling --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jaechang-hits/SciAgent-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/biostatistics/statsmodels-statistical-modeling .gemini/skills/statsmodels-statistical-modeling && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "statsmodels-statistical-modeling" agent skill from https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/biostatistics/statsmodels-statistical-modeling into .gemini/skills/statsmodels-statistical-modeling/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "statsmodels-statistical-modeling", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install jaechang-hits/SciAgent-Skills statsmodels-statistical-modelingInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/jaechang-hits/SciAgent-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/biostatistics/statsmodels-statistical-modeling .github/skills/statsmodels-statistical-modeling && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "statsmodels-statistical-modeling" agent skill from https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/biostatistics/statsmodels-statistical-modeling into .github/skills/statsmodels-statistical-modeling/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "statsmodels-statistical-modeling", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install jaechang-hits/SciAgent-Skills statsmodels-statistical-modeling --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jaechang-hits/SciAgent-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/biostatistics/statsmodels-statistical-modeling .opencode/skills/statsmodels-statistical-modeling && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "statsmodels-statistical-modeling" agent skill from https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/biostatistics/statsmodels-statistical-modeling into .opencode/skills/statsmodels-statistical-modeling/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "statsmodels-statistical-modeling", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
statsmodels-statistical-modelingPython statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests.
Statsmodels Statistical Modeling is an agent skill from jaechang-hits/SciAgent-Skills. Python statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests. Use scikit-learn for ML; statistical-analysis for test choice.
Its SKILL.md is about 4.2k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Data & Analytics, covering Statistics and Forecasting and time series. It works with statsmodels, Python and scikit-learn. The repository describes itself as: 197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers OmicsHorizon. The licence is BSD-3-Clause.
7 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 82c862c. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
pipFrom the folder's file list and the shell code blocks in SKILL.md.
Links to these hosts (documentation or services it may open):
statsmodels.orgFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Statsmodels Statistical Modeling loads about 4.2k tokens when it runs. Until then it costs about 71 tokens; SKILL.md has 677 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from jaechang-hits/SciAgent-Skills at commit 82c862c, republished under its BSD-3-Clause licence (© jaechang-hits). 677 words, ~4,201 tokens.
.claude/skills/statsmodels-statistical-modeling/SKILL.md (or your agent's skills folder).Statsmodels provides classical statistical modeling with rigorous inference for Python. It covers linear models, generalized linear models, discrete choice, time series, and comprehensive diagnostics. Unlike scikit-learn (prediction-focused), statsmodels emphasizes coefficient interpretation, p-values, confidence intervals, and model diagnostics.
y ~ x1 + x2 + C(group)) for intuitive model specificationscikit-learn insteadpymc insteadstatsmodels, numpy, pandas, scipymatplotlib (for diagnostic plots), patsy (for formula API, included with statsmodels)pip install statsmodels numpy pandas matplotlibimport statsmodels.api as sm
import statsmodels.formula.api as smf
import pandas as pd
import numpy as np
# Generate sample data
np.random.seed(42)
n = 100
df = pd.DataFrame({
"x1": np.random.randn(n),
"x2": np.random.randn(n),
"group": np.random.choice(["A", "B"], n)
})
df["y"] = 2 + 3 * df["x1"] - 1.5 * df["x2"] + np.random.randn(n)
# OLS with formula API (R-style)
results = smf.ols("y ~ x1 + x2 + C(group)", data=df).fit()
print(results.summary())
print(f"R²: {results.rsquared:.3f}, AIC: {results.aic:.1f}")Standard linear models with comprehensive diagnostics.
import statsmodels.api as sm
import numpy as np
# Generate data
np.random.seed(42)
X = np.random.randn(200, 3)
y = 1 + 2*X[:, 0] - 0.5*X[:, 1] + np.random.randn(200)
# ALWAYS add constant for intercept
X_const = sm.add_constant(X)
results = sm.OLS(y, X_const).fit()
print(results.summary())
print(f"\nCoefficients: {results.params}")
print(f"P-values: {results.pvalues}")
print(f"R²: {results.rsquared:.4f}")
# Predictions with confidence intervals
pred = results.get_prediction(X_const[:5])
print(pred.summary_frame())# Robust standard errors (heteroskedasticity-consistent)
results_robust = sm.OLS(y, X_const).fit(cov_type="HC3")
print("Robust SEs:", results_robust.bse)
# Weighted Least Squares
weights = 1 / np.abs(results.resid + 0.1) # Example weights
results_wls = sm.WLS(y, X_const, weights=weights).fit()
print(f"WLS R²: {results_wls.rsquared:.4f}")Extend regression to non-normal outcomes (binary, count, continuous-positive).
import statsmodels.api as sm
import numpy as np
# Poisson regression for count data
np.random.seed(42)
X = np.random.randn(200, 2)
X_const = sm.add_constant(X)
y_counts = np.random.poisson(np.exp(0.5 + 0.3*X[:, 0]))
model = sm.GLM(y_counts, X_const, family=sm.families.Poisson())
results = model.fit()
print(results.summary())
# Rate ratios
rate_ratios = np.exp(results.params)
print(f"Rate ratios: {rate_ratios}")
# Check overdispersion
overdispersion = results.pearson_chi2 / results.df_resid
print(f"Overdispersion ratio: {overdispersion:.2f}")
if overdispersion > 1.5:
print("→ Consider Negative Binomial model")Binary, multinomial, and count outcome models.
import statsmodels.api as sm
import numpy as np
# Logistic regression
np.random.seed(42)
X = np.random.randn(300, 2)
X_const = sm.add_constant(X)
prob = 1 / (1 + np.exp(-(0.5 + X[:, 0] - 0.5*X[:, 1])))
y_binary = np.random.binomial(1, prob)
logit_results = sm.Logit(y_binary, X_const).fit()
print(logit_results.summary())
# Odds ratios
odds_ratios = np.exp(logit_results.params)
print(f"Odds ratios: {odds_ratios}")
# Marginal effects (at means)
margeff = logit_results.get_margeff()
print(margeff.summary())
# Predicted probabilities
probs = logit_results.predict(X_const[:5])
print(f"Predicted P(Y=1): {probs}")Univariate and multivariate time series modeling and forecasting.
import statsmodels.api as sm
from statsmodels.tsa.arima.model import ARIMA
from statsmodels.tsa.stattools import adfuller
import numpy as np
import pandas as pd
# Generate time series
np.random.seed(42)
dates = pd.date_range("2020-01-01", periods=200, freq="D")
y = np.cumsum(np.random.randn(200)) + 50
ts = pd.Series(y, index=dates)
# Stationarity test
adf_result = adfuller(ts)
print(f"ADF statistic: {adf_result[0]:.4f}, p-value: {adf_result[1]:.4f}")
print("Stationary" if adf_result[1] < 0.05 else "Non-stationary → difference")
# Fit ARIMA
model = ARIMA(ts, order=(1, 1, 1))
results = model.fit()
print(results.summary())
# Forecast with confidence intervals
forecast = results.get_forecast(steps=30)
forecast_df = forecast.summary_frame()
print(f"30-day forecast:\n{forecast_df.head()}")# Seasonal ARIMA (SARIMAX)
from statsmodels.tsa.statespace.sarimax import SARIMAX
# Monthly data with yearly seasonality
model_sarima = SARIMAX(ts, order=(1, 1, 1), seasonal_order=(1, 1, 1, 12))
results_sarima = model_sarima.fit(disp=False)
print(f"AIC: {results_sarima.aic:.1f}")
# Diagnostic plots
results_sarima.plot_diagnostics(figsize=(12, 8))Assumption tests, hypothesis tests, and model validation.
import statsmodels.api as sm
from statsmodels.stats.diagnostic import het_breuschpagan, acorr_ljungbox
from statsmodels.stats.stattools import jarque_bera
import numpy as np
# Fit a model first
np.random.seed(42)
X = sm.add_constant(np.random.randn(200, 2))
y = 1 + 2*X[:, 1] + np.random.randn(200) * X[:, 1] # Heteroskedastic
results = sm.OLS(y, X).fit()
# Heteroskedasticity test (Breusch-Pagan)
bp_stat, bp_p, _, _ = het_breuschpagan(results.resid, X)
print(f"Breusch-Pagan p-value: {bp_p:.4f} {'→ heteroskedastic' if bp_p < 0.05 else '→ OK'}")
# Normality test (Jarque-Bera)
jb_stat, jb_p, _, _ = jarque_bera(results.resid)
print(f"Jarque-Bera p-value: {jb_p:.4f} {'→ non-normal' if jb_p < 0.05 else '→ OK'}")
# Autocorrelation test (Ljung-Box)
lb_result = acorr_ljungbox(results.resid, lags=[10], return_df=True)
print(f"Ljung-Box p-value (lag 10): {lb_result['lb_pvalue'].values[0]:.4f}")# Variance Inflation Factor (multicollinearity)
from statsmodels.stats.outliers_influence import variance_inflation_factor
vif_data = pd.DataFrame({
"Variable": [f"x{i}" for i in range(X.shape[1])],
"VIF": [variance_inflation_factor(X, i) for i in range(X.shape[1])]
})
print(vif_data) # VIF > 10 suggests multicollinearityIntuitive model specification using formulas with automatic dummy coding.
import statsmodels.formula.api as smf
import pandas as pd
import numpy as np
np.random.seed(42)
df = pd.DataFrame({
"y": np.random.randn(100),
"x1": np.random.randn(100),
"x2": np.random.randn(100),
"group": np.random.choice(["A", "B", "C"], 100),
})
# Formula with categoricals (auto dummy-coded)
res = smf.ols("y ~ x1 + x2 + C(group)", data=df).fit()
print(res.summary())
# Interactions
res2 = smf.ols("y ~ x1 * x2", data=df).fit() # x1 + x2 + x1:x2
print(f"Interaction term p-value: {res2.pvalues['x1:x2']:.4f}")
# Logit via formula
df["binary"] = (df["y"] > 0).astype(int)
logit_res = smf.logit("binary ~ x1 + x2 + C(group)", data=df).fit()
print(f"Logit AIC: {logit_res.aic:.1f}")Goal: Fit OLS, validate assumptions, use robust SEs if needed.
import statsmodels.api as sm
import statsmodels.formula.api as smf
from statsmodels.stats.diagnostic import het_breuschpagan
from statsmodels.stats.outliers_influence import variance_inflation_factor
import numpy as np
import pandas as pd
# 1. Fit initial model
np.random.seed(42)
df = pd.DataFrame({"y": np.random.randn(200), "x1": np.random.randn(200), "x2": np.random.randn(200)})
df["y"] = 2 + 3*df["x1"] - df["x2"] + np.random.randn(200)
results = smf.ols("y ~ x1 + x2", data=df).fit()
# 2. Check heteroskedasticity
bp_stat, bp_p, _, _ = het_breuschpagan(results.resid, results.model.exog)
print(f"Breusch-Pagan p: {bp_p:.4f}")
# 3. If heteroskedastic, use robust SEs
if bp_p < 0.05:
results = smf.ols("y ~ x1 + x2", data=df).fit(cov_type="HC3")
print("Using HC3 robust standard errors")
# 4. Check multicollinearity
X = results.model.exog
for i in range(1, X.shape[1]): # skip constant
print(f"VIF x{i}: {variance_inflation_factor(X, i):.2f}")
# 5. Final results
print(results.summary())
print(f"\nAIC: {results.aic:.1f}, BIC: {results.bic:.1f}")Goal: Compare nested and non-nested models using appropriate criteria.
import statsmodels.formula.api as smf
from scipy import stats
import pandas as pd
import numpy as np
np.random.seed(42)
df = pd.DataFrame({"y": np.random.randn(200), "x1": np.random.randn(200),
"x2": np.random.randn(200), "x3": np.random.randn(200)})
df["y"] = 1 + 2*df["x1"] - df["x2"] + 0.1*df["x3"] + np.random.randn(200)
# Fit nested models
m1 = smf.ols("y ~ x1", data=df).fit()
m2 = smf.ols("y ~ x1 + x2", data=df).fit()
m3 = smf.ols("y ~ x1 + x2 + x3", data=df).fit()
# Compare via AIC/BIC (lower = better)
comparison = pd.DataFrame({
"R²": [m.rsquared for m in [m1, m2, m3]],
"AIC": [m.aic for m in [m1, m2, m3]],
"BIC": [m.bic for m in [m1, m2, m3]],
}, index=["y~x1", "y~x1+x2", "y~x1+x2+x3"])
print(comparison)
# Likelihood ratio test (nested: m2 vs m3)
lr_stat = 2 * (m3.llf - m2.llf)
p_val = 1 - stats.chi2.cdf(lr_stat, df=m3.df_model - m2.df_model)
print(f"\nLR test (m3 vs m2): stat={lr_stat:.2f}, p={p_val:.4f}")Goal: Test stationarity, identify model order, forecast.
from statsmodels.tsa.arima.model import ARIMA
from statsmodels.tsa.stattools import adfuller
from statsmodels.graphics.tsaplots import plot_acf, plot_pacf
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
# Generate data
np.random.seed(42)
ts = pd.Series(np.cumsum(np.random.randn(200)) + 100,
index=pd.date_range("2020-01-01", periods=200, freq="D"))
# 1. Test stationarity
adf_p = adfuller(ts)[1]
print(f"ADF p-value: {adf_p:.4f} → {'stationary' if adf_p < 0.05 else 'non-stationary'}")
# 2. Identify order from ACF/PACF (on differenced series)
fig, (ax1, ax2) = plt.subplots(2, 1, figsize=(10, 6))
plot_acf(ts.diff().dropna(), lags=20, ax=ax1)
plot_pacf(ts.diff().dropna(), lags=20, ax=ax2)
plt.savefig("acf_pacf.png", dpi=150, bbox_inches="tight")
# 3. Fit and forecast
model = ARIMA(ts[:180], order=(1, 1, 1))
results = model.fit()
forecast = results.get_forecast(steps=20)
fc_df = forecast.summary_frame()
print(f"ARIMA AIC: {results.aic:.1f}")
print(f"Forecast (first 5 days):\n{fc_df.head()}")| Parameter | Module | Default | Range / Options | Effect |
|---|---|---|---|---|
cov_type | OLS/WLS/GLM | "nonrobust" | "HC0"-"HC3", "HAC", "cluster" | Robust covariance estimator |
family | GLM | required | Poisson(), Binomial(), Gamma(), etc. | Distribution family |
order | ARIMA | required | (p, d, q) tuple | AR order, differencing, MA order |
seasonal_order | SARIMAX | (0,0,0,0) | (P, D, Q, s) tuple | Seasonal ARIMA parameters |
alpha | summary(), conf_int() | 0.05 | 0.01-0.10 | Significance level for CIs |
maxiter | All .fit() | 35-100 | 50-1000 | Max optimization iterations |
method | .fit() | model-dependent | "newton", "bfgs", "lbfgs", "powell" | Optimization algorithm |
lags | ACF/PACF | None | 10-50 | Number of lags to display |
Always add a constant for OLS/GLM: sm.add_constant(X) or use formula API (adds intercept automatically)
Match model to outcome type: Binary → Logit/Probit, Counts → Poisson/NegBin, Continuous → OLS/WLS, Time series → ARIMA
Check diagnostics before interpreting: Run Breusch-Pagan (heteroskedasticity), Jarque-Bera (normality), Ljung-Box (autocorrelation) on residuals
Use robust SEs when assumptions fail: results = model.fit(cov_type="HC3") for heteroskedasticity-robust inference
Report effect sizes, not just p-values: Include coefficients, confidence intervals, and R² alongside significance tests
Prefer formula API for exploratory work: smf.ols("y ~ x1 * x2 + C(group)", data=df) is more readable and handles categoricals automatically
Test stationarity before time series modeling: Use ADF test; difference if non-stationary
When to use: Comparing means across 3+ groups.
import statsmodels.formula.api as smf
from statsmodels.stats.multicomp import pairwise_tukeyhsd
import pandas as pd
import numpy as np
np.random.seed(42)
df = pd.DataFrame({"value": np.concatenate([np.random.normal(m, 1, 30) for m in [5, 6, 7]]),
"group": np.repeat(["A", "B", "C"], 30)})
# One-way ANOVA
anova = smf.ols("value ~ C(group)", data=df).fit()
print(sm.stats.anova_lm(anova))
# Post-hoc Tukey HSD
tukey = pairwise_tukeyhsd(df["value"], df["group"], alpha=0.05)
print(tukey)When to use: Determining required sample size before a study.
from statsmodels.stats.power import TTestIndPower
analysis = TTestIndPower()
# What sample size for medium effect (d=0.5), 80% power, alpha=0.05?
n = analysis.solve_power(effect_size=0.5, alpha=0.05, power=0.8)
print(f"Required n per group: {n:.0f}")
# Power for given sample size
power = analysis.solve_power(effect_size=0.5, alpha=0.05, nobs1=50)
print(f"Power with n=50: {power:.3f}")When to use: Hierarchical/clustered data (patients within hospitals, students within schools).
import statsmodels.formula.api as smf
import pandas as pd
import numpy as np
np.random.seed(42)
df = pd.DataFrame({
"y": np.random.randn(100), "x": np.random.randn(100),
"group": np.repeat(range(10), 10)
})
# Random intercept model
model = smf.mixedlm("y ~ x", data=df, groups=df["group"])
results = model.fit()
print(results.summary())| Problem | Cause | Solution |
|---|---|---|
MissingDataError | NaN values in data | Drop NAs: df.dropna() or impute before fitting |
| No intercept in results | Forgot sm.add_constant() | Always add constant, or use smf.ols() formula API |
ConvergenceWarning | Optimization failed | Increase maxiter, try different method, or scale variables |
| Overdispersion in Poisson | Variance > mean | Switch to NegativeBinomial or use GLM(family=NegativeBinomial()) |
| Non-stationary time series | Trend or unit root | Difference the series (ts.diff()) or increase d in ARIMA |
| Singular matrix error | Perfect multicollinearity | Remove redundant variables; check VIF > 10 |
| Different results from R | Default settings differ | Check: constant term, link function, optimizer, SE type |
PerfectSeparationError in Logit | Predictor perfectly separates classes | Use regularized logistic (penalized MLE) or Firth's method |
© jaechang-hits, BSD-3-Clause. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in skills/biostatistics/statsmodels-statistical-modeling of jaechang-hits/SciAgent-Skills.
Open the folder on GitHubat commit 82c862c
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in jaechang-hits/SciAgent-Skills, which our catalogue first saw on October 9, 2026.
Statsmodels Statistical Modeling next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Statsmodels Statistical Modeling this skilljaechang-hits/SciAgent-Skills | 371 | 1 repos | ~4.2k | Automated safety check: Pass | BSD-3-Clause | |
| StatsmodelszLanqing/codex-claude-academic-skills | 4.7k | 15 repos | ~4.9k | Automated safety check: Pass | BSD-3-Clause | |
| Statistical Data Analysislingzhi227/agent-research-skills | 386 | — | ~886 | Automated safety check: Pass | None | |
| Quant Statistical MethodsHKUDS/Vibe-Trading | 35k | — | ~4k | Automated safety check: Pass | MIT | |
| StatsmodelsK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~3.2k | Automated safety check: Notes | BSD-3-Clause | |
| Bio Temporal Genomics Temporal GrnGPTomics/bioSkills | 1.2k | 1 repos | ~5k | Automated safety check: Pass | MIT |
zLanqing/codex-claude-academic-skills
Statistical models library for Python. An agent skill from zLanqing/codex-claude-academic-skills.
lingzhi227/agent-research-skills
Writes statistical analysis code for experimental data, runs it through a four-round review, and reports effect sizes, p-values and confidence intervals.
HKUDS/Vibe-Trading
Guides your agent through unit-root, cointegration, GARCH, bootstrap and regression-diagnostic tests on financial time series, using a tested helper module.
K-Dense-AI/scientific-agent-skills
Fits and diagnoses Python statistical models including OLS, GLM, discrete and mixed models, ARIMA and SARIMAX.
GPTomics/bioSkills
Infers directed, time-delayed gene regulatory edges from BULK time-series expression using Granger causality (statsmodels VAR F-test), dynGENIE3 (tree ensembles regressing ODE-derived derivatives…
GPTomics/bioSkills
End-to-end bulk time-course analysis from an expression matrix to temporal gene modules and per-cluster pathway enrichment.
jaechang-hits/SciAgent-Skills
NEB-IRC activation energy pipeline for reaction barriers using GFN2-xTB and pysisyphus.
jaechang-hits/SciAgent-Skills
3Dmol.js WebGL molecular visualization emitted as self-contained HTML.
jaechang-hits/SciAgent-Skills
Constraint-based (COBRA) analysis of genome-scale metabolic models: FBA, FVA, knockouts, flux sampling, production envelopes, gapfilling, media optimization.
jaechang-hits/SciAgent-Skills
Read, write, and edit ChemDraw CDX/CDXML files with RDKit's rdkit.Chem.rdChemDraw plus direct XML editing, always paired with a rendered PNG.
jaechang-hits/SciAgent-Skills
Programmatic PubMed access via NCBI E-utilities REST API. An agent skill from jaechang-hits/SciAgent-Skills.
jaechang-hits/SciAgent-Skills
Scaffold a new SciAgent-Skills entry. An agent skill from jaechang-hits/SciAgent-Skills.
Works with
Categories
Python statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests. Statsmodels Statistical Modeling is an agent skill from jaechang-hits/SciAgent-Skills. Python statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests.
Statsmodels Statistical Modeling fits situations like: tasks that involve Statistics; tasks that involve Forecasting and time series.
Run `npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a claude-code`. Or copy the skill folder (skills/biostatistics/statsmodels-statistical-modeling in jaechang-hits/SciAgent-Skills) into .claude/skills/statsmodels-statistical-modeling in your project. Claude Code loads it when a task matches its description.
Run `npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a codex`. Or copy the skill folder (skills/biostatistics/statsmodels-statistical-modeling in jaechang-hits/SciAgent-Skills) into .agents/skills/statsmodels-statistical-modeling in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add jaechang-hits/SciAgent-Skills --skill statsmodels-statistical-modeling -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/statsmodels-statistical-modeling, .gemini/skills/statsmodels-statistical-modeling, .github/skills/statsmodels-statistical-modeling and .opencode/skills/statsmodels-statistical-modeling in your project.
Going by SKILL.md and its folder, Statsmodels Statistical Modeling needs the command-line tools its instructions call (pip). Our summary lists: Python 3.
SKILL.md names 1 domain. As links in the text: statsmodels.org. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Statsmodels Statistical Modeling is published under the BSD-3-Clause licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.
About 4.2k tokens (SKILL.md is roughly 17k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Statsmodels Statistical Modeling: Statsmodels (zLanqing/codex-claude-academic-skills, 4.7k stars), Statistical Data Analysis (lingzhi227/agent-research-skills, 386 stars), Quant Statistical Methods (HKUDS/Vibe-Trading, 35k stars) and Statsmodels (K-Dense-AI/scientific-agent-skills, 48k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
jaechang-hits (a GitHub user) maintains it in jaechang-hits/SciAgent-Skills, which has 371 GitHub stars. The repository holds 169 skills in this directory. The repository was last updated on September 29, 2026.
Source: jaechang-hits/SciAgent-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.