Astropy
zLanqing/codex-claude-academic-skills
Comprehensive Python library for astronomy and astrophysics.
A skill your agent uses when running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits, format, files, online Methods, Supplementary Information…
Install Ngeo Submission
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills ngeo-submission --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/Nature-Geoscience-Skills/skills/ngeo-submission .claude/skills/ngeo-submission && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "ngeo-submission" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Nature-Geoscience-Skills/skills/ngeo-submission into .claude/skills/ngeo-submission/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "ngeo-submission", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Nature-Geoscience-Skills/skills/ngeo-submissionType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills ngeo-submission --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/Nature-Geoscience-Skills/skills/ngeo-submission .agents/skills/ngeo-submission && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "ngeo-submission" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Nature-Geoscience-Skills/skills/ngeo-submission into .agents/skills/ngeo-submission/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "ngeo-submission", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills ngeo-submission --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/Nature-Geoscience-Skills/skills/ngeo-submission .cursor/skills/ngeo-submission && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "ngeo-submission" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Nature-Geoscience-Skills/skills/ngeo-submission into .cursor/skills/ngeo-submission/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "ngeo-submission", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/brycewang-stanford/Awesome-Journal-Skills.git --path Nature-Geoscience-Skills/skills/ngeo-submission--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills ngeo-submission --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/Nature-Geoscience-Skills/skills/ngeo-submission .gemini/skills/ngeo-submission && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "ngeo-submission" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Nature-Geoscience-Skills/skills/ngeo-submission into .gemini/skills/ngeo-submission/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "ngeo-submission", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills ngeo-submissionInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/Nature-Geoscience-Skills/skills/ngeo-submission .github/skills/ngeo-submission && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "ngeo-submission" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Nature-Geoscience-Skills/skills/ngeo-submission into .github/skills/ngeo-submission/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "ngeo-submission", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills ngeo-submission --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/Nature-Geoscience-Skills/skills/ngeo-submission .opencode/skills/ngeo-submission && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "ngeo-submission" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Nature-Geoscience-Skills/skills/ngeo-submission into .opencode/skills/ngeo-submission/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "ngeo-submission", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
ngeo-submission- GitHub stars
- 1.2k
- Token cost
- ~1.8k tokens
- SKILL.md length
- 721 words
- Files
- 3
- Skills in repo
- 2,387
- Repo updated
- First seen
- Licence
- MIT
At a glance
A skill your agent uses when running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits, format, files, online Methods, Supplementary Information…
- Works in 5 steps: Limit audit. Word count (main text… → Compliance sweep. Reporting Summary… → Pointer audit. Every… → …
- Running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits
- SKILL.md covers When to trigger, Pre-submission checklist, Submission-system notes and Night-before dry run, plus 4 more sections
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
What it does
Ngeo Submission is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits, format, files, online Methods, Supplementary Information, Reporting Summary, data/code availability, and Editorial Manager metadata. Verifies submission readiness; does not write content.
Its SKILL.md is about 1.8k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `templates/checklist.md` and `templates/manuscript_template.md`).
It sits in Research & Science, covering Physical and earth sciences. The repository describes itself as: Journal-specific Claude Code/Codex skill packs covering mainstream journals — AER, QJE, Nature, Cell, 管理世界, 经济研究 & 200+ more — your fast track to getting published. ｜ 覆盖主流期刊的… The licence is MIT.
When your agent uses it
- Running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits
- Supplementary Information
- Reporting Summary
- Data/code availability
Example prompts
- “/ngeo-submission”
Workflow steps
5 steps, taken from the first numbered list in SKILL.md.
- Limit audit. Word count (main text only), abstract words, title characters, display-item count, reference count — all under their ceilings.
- Compliance sweep. Reporting Summary complete; data DOI live; code repository accessible; ethics/permit statements present.
- Pointer audit. Every "Methods"/"Supplementary" mention maps to real content; no S-prefixed item uncited.
- Metadata dry-fill. Draft the Editorial Manager fields (referees, contributions, disclosures) in a text file so the live session is…
- Freeze. No content edits after the dry run; any change reopens the limit and pointer audits.
What it can do on your machine
Read from SKILL.md and the folder at commit 932eb23. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Ngeo Submission loads about 1.8k tokens when it runs. Until then it costs about 80 tokens; SKILL.md has 721 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
The full file from brycewang-stanford/Awesome-Journal-Skills at commit 932eb23, republished under its MIT licence (© brycewang-stanford). 721 words, ~1,818 tokens.
Download SKILL.mdSave it as
.claude/skills/ngeo-submission/SKILL.md (or your agent's skills folder). This skill also uses 2 other files; get the full folder from GitHub.- name
- ngeo-submission
- description
- Use when running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits, format, files, online Methods, Supplementary Information, Reporting Summary, data/code availability, and Editorial Manager metadata. Verifies submission readiness; does not write content.
Nature Geoscience Submission Preflight (ngeo-submission)
When to trigger
- "Submitting tonight" — the last check before uploading to Editorial Manager
- You are unsure which files the Nature Portfolio system expects
- You need to confirm the Reporting Summary and data/code-availability statements are complete
- You want a single gate before handing off to the in-house editor
Pre-submission checklist
Scope and length
- The manuscript clears the broad-interest Earth-system gate (see
ngeo-scope-fit) - Main text within the ~3,000-word Article limit (excluding abstract/Methods/refs/legends)
- Abstract ≤ ~200 words, unreferenced, and uses "Here we show"
- Title ≤ ~90 characters
- Display items within the 4–6 ceiling; references near/under ~50
Format and structure
- Correct content type selected (Article or Brief Communication)
- Online Methods section present, divided by topical subheadings
- Results/Discussion organised with 3–4 topical subheadings (Article)
- SI units, consistent significant figures, every quantity with uncertainty
- Every acronym/symbol defined on first use; notation consistent throughout
- Nature reference style applied
Compliance files (these gate acceptance, not just submission)
- Data availability statement: repository + accession/DOI (community repo where available, e.g. PANGAEA)
- Code availability statement for custom analysis code
- Nature Portfolio Reporting Summary completed and consistent with Methods
- Any required ethics / sample-provenance / permit statements (fieldwork, cores, meteorites)
- Competing-interests statement
- Author-contributions (CRediT-style) statement
Files to upload
- Main manuscript (main text + online Methods, per the current template)
- All figures at production resolution (vector for line art; high-res raster for imagery)
- Supplementary Information file(s), items labeled Fig. Sn / Table Sn
- Reporting Summary
- Cover letter (justifies broad interest; not seen by reviewers — see
ngeo-cover-letter) - Source data for main figures if required
Editorial Manager metadata
- Corresponding author, ORCID, and all affiliations complete
- Title / abstract / author list entered consistently with the manuscript
- Suggested and excluded referees entered (see
ngeo-referee-strategy) - Double-blind review opt-in selected (and manuscript anonymised) if chosen
- Related manuscripts under consideration disclosed
- Prior preprint (ESSOAr / EarthArXiv) disclosed
Self-consistency
- Every "see Supplementary" / "see Methods" pointer resolves
- Figure/table/reference numbering continuous and matching in-text callouts
- SI items use the S-prefix and are each cited from the main text or Methods
- The main text stands alone without the SI (cross-check
ngeo-supplementary)
Submission-system notes
- Submit through the Nature Portfolio Editorial Manager manuscript-tracking system; verify the current portal and account requirements on the author pages.
- No presubmission enquiries are accepted — the cover letter carries the full case (see
ngeo-cover-letter). - The in-house editor triages on interest before review; most submissions are declined without review, so scope and cover letter are decisive.
- Keep the Reporting Summary and availability statements accurate — they are checked and can hold up acceptance.
- Open-access: Nature Geoscience offers an OA option with an APC (re-check the current figure on the official site); a subscription route also exists.
Show full SKILL.md (292 more words)Show less
Night-before dry run
Run this sequence the evening before, not at the upload screen:
- Limit audit. Word count (main text only), abstract words, title characters, display-item count, reference count — all under their ceilings.
- Compliance sweep. Reporting Summary complete; data DOI live; code repository accessible; ethics/permit statements present.
- Pointer audit. Every "Methods"/"Supplementary" mention maps to real content; no S-prefixed item uncited.
- Metadata dry-fill. Draft the Editorial Manager fields (referees, contributions, disclosures) in a text file so the live session is transcription, not composition.
- Freeze. No content edits after the dry run; any change reopens the limit and pointer audits.
Desk-return / hold triggers to eliminate
| Trigger | Why it stalls or bounces |
|---|---|
| Broad-interest case absent in the cover letter | Editorial reject before review |
| Over the word / display-item / reference limit | Returned for reformatting |
| Missing or inconsistent Reporting Summary | Held before acceptance |
| "Data available on request" only | Non-compliant data statement |
| Custom code with no availability statement | Held before acceptance |
| Main text depends on the SI | Referee friction / editorial return |
Anti-patterns
- Treating the Reporting Summary and data/code statements as afterthoughts
- Submitting a regional study with no broad-interest argument (editorial reject)
- Over-length discovered only at the upload screen
- Deposit-on-request data instead of a repository DOI
- SI items uncited or the main text silently depending on them
- Forgetting to disclose a preprint the editor will find
Output format
【Scope + length】gate cleared; main text ≤~3,000 / abstract ≤~200 / title ≤~90? yes / fix
【Content type】Article / Brief Communication correct? yes / fix
【Methods】online Methods with subheadings present? yes / fix
【Compliance】data DOI / code / Reporting Summary / ethics — all present?
【Files】manuscript / figures / SI / Reporting Summary / cover letter — present?
【Editorial Manager metadata】ORCID / referees / disclosures / double-blind?
【Stands alone】yes / fix
【Next】await reports → ngeo-revision; plan referees → ngeo-referee-strategyAttached resources
templates/checklist.md— full pre-submission self-check across scope / length / format / compliance / files / metadata / self-consistencytemplates/manuscript_template.md— Article skeleton (title, "Here we show" abstract, main text, online Methods, availability statements, SI outline, cover letter)../../resources/external_tools.md— reanalysis/satellite/proxy data sources, repositories, and the geospatial software stack
Portal, content types, word/display-item limits, Reporting Summary, and required statements are volatile — verify all on the official Nature Geoscience author pages before submitting (Checked: 2026-07-16).
© brycewang-stanford, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Files
SKILL.md and 2 other files in Nature-Geoscience-Skills/skills/ngeo-submission of brycewang-stanford/Awesome-Journal-Skills.
- SKILL.md
- templates/checklist.md
- templates/manuscript_template.md
Open the folder on GitHubat commit 932eb23
Compare with similar skills
Ngeo Submission next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Ngeo Submission this skillbrycewang-stanford/Awesome-Journal-Skills | 1.2k | — | ~1.8k | Automated safety check: Pass | MIT | |
| AstropyzLanqing/codex-claude-academic-skills | 4.7k | 13 repos | ~2.9k | Automated safety check: Pass | BSD-3-Clause | |
| PymatgenzLanqing/codex-claude-academic-skills | 4.7k | 11 repos | ~5k | Automated safety check: Pass | MIT | |
| Cantera Ignition DelayK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~2.2k | Automated safety check: Pass | MIT | |
| Weathertrpc-group/trpc-agent-go | 1.9k | 8 repos | ~591 | Automated safety check: Pass | Apache-2.0 | |
| Pymol VisualizationChatMol/ChatMol | 373 | — | ~1.2k | Automated safety check: Pass | MIT |
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Questions about Ngeo Submission
What does Ngeo Submission do?
A skill your agent uses when running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits, format, files, online Methods, Supplementary Information…. Ngeo Submission is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits, format, files, online Methods, Supplementary Information, Reporting Summary, data/code availability, and Editorial Manager metadata.
When should I use Ngeo Submission?
Ngeo Submission fits situations like: running the final pre-submission preflight for a Nature Geoscience manuscript — word/display-item limits; supplementary Information; reporting Summary; data/code availability.
How do I install Ngeo Submission in Claude Code?
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a claude-code`. Or copy the skill folder (Nature-Geoscience-Skills/skills/ngeo-submission in brycewang-stanford/Awesome-Journal-Skills) into .claude/skills/ngeo-submission in your project. Claude Code loads it when a task matches its description.
How do I install Ngeo Submission in Codex?
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a codex`. Or copy the skill folder (Nature-Geoscience-Skills/skills/ngeo-submission in brycewang-stanford/Awesome-Journal-Skills) into .agents/skills/ngeo-submission in your project. Codex loads it when a task matches its description.
Can I use Ngeo Submission in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill ngeo-submission -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/ngeo-submission, .gemini/skills/ngeo-submission, .github/skills/ngeo-submission and .opencode/skills/ngeo-submission in your project.
What does Ngeo Submission need to run?
SKILL.md names no scripts, command-line tools or credentials: Ngeo Submission is instructions for the agent only.
Does Ngeo Submission access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Ngeo Submission safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Ngeo Submission use?
Ngeo Submission is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
How many tokens does Ngeo Submission use?
About 1.8k tokens (SKILL.md is roughly 7.3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Ngeo Submission?
Skills that share tags, products or a category with Ngeo Submission: Astropy (zLanqing/codex-claude-academic-skills, 4.7k stars), Pymatgen (zLanqing/codex-claude-academic-skills, 4.7k stars), Cantera Ignition Delay (K-Dense-AI/scientific-agent-skills, 48k stars) and Weather (trpc-group/trpc-agent-go, 1.9k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Ngeo Submission?
brycewang-stanford (a GitHub user) maintains it in brycewang-stanford/Awesome-Journal-Skills, which has 1,231 GitHub stars. The repository holds 2,387 skills in this directory. The repository was last updated on September 27, 2026.
Source: brycewang-stanford/Awesome-Journal-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.