A skill your agent uses to build Molecular Cell's data and code deposition plan and the Data and Code Availability statement inside STAR Methods Resource Availability — approved repositories (GEO…

MITAuto-check passedBusiness, Finance & HR

Install Molcell Data

skills CLI
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill molcell-data -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install brycewang-stanford/Awesome-Journal-Skills molcell-data --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/Molecular-Cell-Skills/skills/molcell-data .claude/skills/molcell-data && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
molcell-data
GitHub stars
1.2k
Token cost
~1.3k tokens
SKILL.md length
470 words
Files
1
Skills in repo
2,387
Repo updated
First seen
Licence
MIT

At a glance

A skill your agent uses to build Molecular Cell's data and code deposition plan and the Data and Code Availability statement inside STAR Methods Resource Availability — approved repositories (GEO…

  • Accessions/DOIs at submission
  • SKILL.md covers When to trigger, Where the statement lives, Deposit in approved… and Cell Press Data and Code…, plus 4 more sections
  • Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
  • Cell Presss standardized availability format with Mendeley Data as Elseviers default

What it does

Molcell Data is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use to build Molecular Cell's data and code deposition plan and the Data and Code Availability statement inside STAR Methods Resource Availability — approved repositories (GEO, PDB/EMDB, PRIDE), accessions/DOIs at submission, and Cell Press's standardized availability format with Mendeley Data as Elsevier's default.

Its SKILL.md is about 1.3k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Business, Finance & HR, covering Interview preparation. The repository describes itself as: Journal-specific Claude Code/Codex skill packs covering mainstream journals — AER, QJE, Nature, Cell, 管理世界, 经济研究 & 200+ more — your fast track to getting published. | 覆盖主流期刊的… The licence is MIT.

When your agent uses it

  • Accessions/DOIs at submission
  • Cell Presss standardized availability format with Mendeley Data as Elseviers default

Example prompts

  • “s standardized availability format with Mendeley Data as Elsevier”
  • “/molcell-data”

What it can do on your machine

Read from SKILL.md and the folder at commit 932eb23. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Molcell Data loads about 1.3k tokens when it runs. Until then it costs about 83 tokens; SKILL.md has 470 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~83
When it runs · the whole SKILL.md, loaded when a task matches
~1.3k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from brycewang-stanford/Awesome-Journal-Skills at commit 932eb23, republished under its MIT licence (© brycewang-stanford). 470 words, ~1,299 tokens.

Download SKILL.mdSave it as .claude/skills/molcell-data/SKILL.md (or your agent's skills folder).
name
molcell-data
description
Use to build Molecular Cell's data and code deposition plan and the Data and Code Availability statement inside STAR Methods Resource Availability — approved repositories (GEO, PDB/EMDB, PRIDE), accessions/DOIs at submission, and Cell Press's standardized availability format with Mendeley Data as Elsevier's default.

Data & Code Availability (molcell-data)

When to trigger

  • There is no Data and Code Availability statement, or it says "available on request."
  • Sequencing / structures / proteomics / datasets are not deposited or lack accessions.
  • Custom analysis code is not in a public, archived repository.
  • You need to draft the standardized statement for STAR Methods Resource Availability.

Where the statement lives

Molecular Cell's Data and Code Availability statement is a required subsection of Resource Availability inside STAR Methods (see molcell-star-methods) — not a free-floating paragraph. Datasets deposited for this paper must also appear in the Key Resources Table under "Deposited Data."

Deposit in approved repositories (with accession/DOI)

Data typeDeposit in (examples)
High-throughput sequencing (ChIP/RNA/ATAC/CLIP-seq)GEO / SRA
Nucleotide / genome sequencesGenBank / ENA / DDBJ
Macromolecular structuresPDB
Cryo-EM maps (and half-maps)EMDB (map) + PDB (model)
CrystallographyPDB (coordinates + structure factors)
Proteomics / mass spec / cross-linking MSPRIDE / ProteomeXchange (+ jPOST where used)
NMRBMRB + PDB
Imaging / general structured datasetsBioStudies / BioImage Archive
Generic datasets (Elsevier default)Mendeley Data, or Zenodo / Dryad
Plasmids / unique reagentsAddgene
Code (archive a release for a DOI)GitHub/GitLab + Zenodo (citable DOI)

Mendeley Data is Elsevier's default repository for datasets without a dedicated community repository. Prefer a community repository (GEO, PDB/EMDB, PRIDE) when one exists for the data type — Molecular Cell's molecular focus means most primary data have one.

  • Obtain accession numbers / DOIs before submission; reviewers and editors expect them in hand, and for structures they will check map-model fit against the deposited entry.
  • Code that reproduces the analysis must be public and archived (a citable DOI via Zenodo) — a bare GitHub link is not durable.
Show full SKILL.md (208 more words)Show less

Cell Press Data and Code Availability format

Cell Press uses a standardized statement. Provide a sentence for each item:

Data and Code Availability

• [DATA] The [datatype] data generated in this study have been deposited at
  [GEO / PDB+EMDB / PRIDE] and are publicly available as of the date of
  publication. Accession numbers are listed in the Key Resources Table. /
  This paper analyzes existing, publicly available data [accessions in KRT].

• [CODE] All original code has been deposited at [Zenodo/Mendeley Data] and is
  publicly available as of the date of publication. DOIs are listed in the Key
  Resources Table. / This paper does not report original code.

• [ADDITIONAL] Any additional information required to reanalyze the data
  reported in this paper is available from the Lead Contact upon request.

Each item must be addressed even if the answer is "this paper does not report…". Restricted human/clinical data must state the controlled-access procedure and the controlling body.

Structure-specific deposition (Molecular Cell-heavy)

  • Cryo-EM: deposit the map (and typically half-maps and mask) at EMDB and the model at PDB; report the resolution and the FSC threshold used.
  • X-ray: deposit coordinates and structure factors at PDB.
  • Validation reports should be generatable from the deposited entries — reviewers may request them.
  • Unique materials sharing belongs in Materials Availability (molcell-star-methods); use Addgene/MTA and state how.
  • Ethics approvals (IRB/IACUC, consent, permits) belong in Experimental Model and Subject Details.
  • Identify key reagents with RRIDs in the Key Resources Table.

Output format

【Data deposited】 type → repository → accession/DOI (list each)  | gaps
【Structures】 EMDB/PDB (map+model) or PDB (coords+SF)? resolution/FSC stated?
【Code public + archived DOI】 yes/no (repo + Zenodo/Mendeley DOI)
【Statement】 DATA ☐ / CODE ☐ / ADDITIONAL ☐ — all drafted?
【In KRT "Deposited Data"】 accessions listed? yes/no
【Restricted data】 controlled-access procedure stated where needed?
【Next】 molcell-summary

Anti-patterns

  • Do not write "available on request" for the primary data behind the figures.
  • Do not deposit a structure model without its map/structure factors.
  • Do not link only to a personal/lab website — use an archival repository with a DOI.
  • Do not forget to mirror accessions into the Key Resources Table.
  • Do not submit without accession numbers/DOIs in hand.

Confirm repository requirements and the exact availability wording against current Cell Press / STAR Methods guidelines.

© brycewang-stanford, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

Just SKILL.md in Molecular-Cell-Skills/skills/molcell-data of brycewang-stanford/Awesome-Journal-Skills.

Open the folder on GitHubat commit 932eb23

Compare with similar skills

Molcell Data next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

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Career-Ops Job Search Centercareer-ops-hq/career-ops74k—~3.3kAutomated safety check: PassMIT
Internship Project Preparation ToolLiuMengxuan04/shushu-internship-tool2.1k—~2.3kAutomated safety check: PassCustom licence
Job Application AssistantMadsLorentzen/ai-job-search45k1 repos~1.2kAutomated safety check: NotesMIT
Interview Coachnoamseg/interview-coach-skill2.3k—~3.7kAutomated safety check: PassMIT

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Questions about Molcell Data

What does Molcell Data do?

A skill your agent uses to build Molecular Cell's data and code deposition plan and the Data and Code Availability statement inside STAR Methods Resource Availability — approved repositories (GEO…. Molcell Data is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use to build Molecular Cell's data and code deposition plan and the Data and Code Availability statement inside STAR Methods Resource Availability — approved repositories (GEO, PDB/EMDB, PRIDE), accessions/DOIs at submission, and Cell Press's standardized availability format with Mendeley Data as Elsevier's default.

When should I use Molcell Data?

Molcell Data fits situations like: accessions/DOIs at submission; cell Presss standardized availability format with Mendeley Data as Elseviers default.

How do I install Molcell Data in Claude Code?

Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill molcell-data -a claude-code`. Or copy the skill folder (Molecular-Cell-Skills/skills/molcell-data in brycewang-stanford/Awesome-Journal-Skills) into .claude/skills/molcell-data in your project. Claude Code loads it when a task matches its description.

How do I install Molcell Data in Codex?

Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill molcell-data -a codex`. Or copy the skill folder (Molecular-Cell-Skills/skills/molcell-data in brycewang-stanford/Awesome-Journal-Skills) into .agents/skills/molcell-data in your project. Codex loads it when a task matches its description.

Can I use Molcell Data in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill molcell-data -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/molcell-data, .gemini/skills/molcell-data, .github/skills/molcell-data and .opencode/skills/molcell-data in your project.

What does Molcell Data need to run?

SKILL.md names no scripts, command-line tools or credentials: Molcell Data is instructions for the agent only.

Does Molcell Data access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Molcell Data safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Molcell Data use?

Molcell Data is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Molcell Data use?

About 1.3k tokens (SKILL.md is roughly 5.2k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Molcell Data?

Skills that share tags, products or a category with Molcell Data: Cc Reporting Standards (franklee16/academic-research-skills, 223 stars), Career-Ops Job Search Center (career-ops-hq/career-ops, 74k stars), Internship Project Preparation Tool (LiuMengxuan04/shushu-internship-tool, 2.1k stars) and Job Application Assistant (MadsLorentzen/ai-job-search, 45k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Molcell Data?

brycewang-stanford (a GitHub user) maintains it in brycewang-stanford/Awesome-Journal-Skills, which has 1,219 GitHub stars. The repository holds 2,387 skills in this directory. The repository was last updated on September 27, 2026.

Source: brycewang-stanford/Awesome-Journal-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.