Health

# Find all note files (exclude topic maps)
for f in {vocabulary.notes}/*.md; do
  [[ -f "$f" ]] || continue
  # Check: YAML frontmatter exists
  head -1 "$f" | grep -q '^---$' || echo "FAIL: $f — no YAML frontmatter"
  # Check: description field present
  rg -q '^description:' "$f" || echo "WARN: $f — missing description field"
  # Check: topics field present and links to at least one topic map
  rg -q '^topics:' "$f" || echo "WARN: $f — missing topics field"
done

[1] Schema Compliance ............ WARN
    2 notes missing description:
      - notes/example-note.md
      - notes/another-note.md
    1 note missing topics:
      - notes/orphaned-claim.md
    12/15 notes fully compliant

# For each note file, check if ANY other file links to it
for f in {vocabulary.notes}/*.md; do
  [[ -f "$f" ]] || continue
  basename=$(basename "$f" .md)
  # Search for [[basename]] in all other files
  count=$(rg -l "\[\[$basename\]\]" --glob '*.md' | grep -v "$f" | wc -l | tr -d ' ')
  if [[ "$count" -eq 0 ]]; then
    echo "WARN: $f — no incoming links (orphan)"
  fi
done

[2] Orphan Detection ............. WARN
    3 orphan notes detected:
      - notes/new-claim.md (created 2h ago — awaiting reflect) [INFO]
      - notes/old-observation.md (created 5d ago) [WARN]
      - notes/forgotten-insight.md (created 14d ago) [FAIL]
    Recommendation: run /reflect on forgotten-insight.md and old-observation.md

# Extract all wiki links from all markdown files
# For each unique link target, verify a file with that name exists
rg -oN '\[\[([^\]]+)\]\]' --glob '*.md' -r '$1' | sort -u | while read target; do
  # Search for file matching this name
  found=$(find . -name "$target.md" -not -path "./.git/*" 2>/dev/null | head -1)
  if [[ -z "$found" ]]; then
    echo "FAIL: dangling link [[${target}]] — no file found"
    # Show which files contain this dangling link
    rg -l "\[\[$target\]\]" --glob '*.md'
  fi
done

[3] Link Health .................. FAIL
    2 dangling links found:
      - [[nonexistent-note]] referenced in:
        - notes/some-claim.md (line 14)
        - notes/another-claim.md (line 8)
      - [[removed-topic]] referenced in:
        - notes/old-note.md (line 22)
    Recommendation: create missing notes or remove broken links

[4] Description Quality .......... WARN
    2 descriptions are restatements:
      - notes/quality-matters.md
        Title: "quality matters more than quantity"
        Description: "quality is more important than quantity in knowledge work"
        Issue: restates title without adding mechanism or implication
      - notes/structure-helps.md
        Title: "structure without processing provides no value"
        Description: "having structure without processing it is not valuable"
        Issue: exact restatement
    Recommendation: rewrite descriptions to add scope, mechanism, or implication

# Check for ops-pattern YAML fields in notes
rg '^(current_phase|completed_phases|batch|source_task|queue_id):' {vocabulary.notes}/ --glob '*.md'
# Check for task file patterns in notes
rg '## (Create|Reflect|Reweave|Verify|Enrich)$' {vocabulary.notes}/ --glob '*.md'

# Check for agent-reflection patterns in notes (methodology observations, workflow assessments)
rg -i '(my methodology|I observed that|agent reflection|session learning|I learned)' {vocabulary.notes}/ --glob '*.md'

# Check for claim-like content in ops that could be notes
# Look for files with description fields in ops/observations/ or ops/methodology/
rg '^description:' ops/observations/*.md ops/methodology/*.md 2>/dev/null

# Check for temporal/queue content in self/
rg '^(current_phase|status|queue):' self/ --glob '*.md' 2>/dev/null
# Check for identity content in ops/
rg -i '(my identity|I am|who I am|my personality)' ops/ --glob '*.md' 2>/dev/null

# Check self/memory/ for notes that have topics linking to notes-space topic maps
rg '^topics:.*\[\[' self/memory/*.md 2>/dev/null | grep -v 'identity\|methodology\|goals\|relationships'

# If self/ doesn't exist, check that goals/handoffs are in ops/
if [[ ! -d "self/" ]]; then
  # Check for goals or handoff content in notes/
  rg -i '(my goals|current goals|handoff|session handoff)' {vocabulary.notes}/ --glob '*.md'
fi

[5] Three-Space Boundaries ....... WARN
    1 boundary violation detected:
      Ops into Notes (infrastructure creep):
        - notes/task-tracking.md contains queue state fields (current_phase, batch)
        - Should be in ops/queue/ not notes/
    1 potential trapped knowledge:
      - ops/observations/interesting-pattern.md has note-like schema
        Consider promoting to notes/ via /reduce or direct creation
    Recommendation: move task-tracking.md to ops/queue/

# Count items in each space
INBOX_COUNT=$(find {vocabulary.inbox}/ -name '*.md' -not -path '*/archive/*' 2>/dev/null | wc -l | tr -d ' ')
NOTES_COUNT=$(find {vocabulary.notes}/ -name '*.md' 2>/dev/null | wc -l | tr -d ' ')
QUEUE_COUNT=$(find ops/queue/ -name '*.md' -not -path '*/archive/*' 2>/dev/null | wc -l | tr -d ' ')

# Calculate ratio
if [[ $((INBOX_COUNT + NOTES_COUNT)) -gt 0 ]]; then
  RATIO=$((INBOX_COUNT * 100 / (INBOX_COUNT + NOTES_COUNT)))
else
  RATIO=0
fi

echo "Inbox: $INBOX_COUNT | Notes: $NOTES_COUNT | In-progress: $QUEUE_COUNT | Ratio: ${RATIO}%"

[6] Processing Throughput ........ WARN
    inbox: 12 | notes: 8 | in-progress: 3 | ratio: 60%
    Inbox items outnumber processed notes — collector's fallacy risk
    Recommendation: run /reduce on oldest inbox items or /pipeline for end-to-end processing

for f in {vocabulary.notes}/*.md; do
  [[ -f "$f" ]] || continue
  basename=$(basename "$f" .md)

  # Last modified (days ago)
  mod_days=$(( ($(date +%s) - $(stat -f %m "$f" 2>/dev/null || stat -c %Y "$f" 2>/dev/null)) / 86400 ))

  # Incoming link count
  incoming=$(rg -l "\[\[$basename\]\]" --glob '*.md' | grep -v "$f" | wc -l | tr -d ' ')

  if [[ $mod_days -gt 30 ]] && [[ $incoming -lt 2 ]]; then
    echo "STALE: $f — $mod_days days old, $incoming incoming links"
  fi
done

[7] Stale Notes .................. WARN
    4 stale notes detected (>30d old, <2 incoming links):
      - notes/old-observation.md (92d, 0 links) [FAIL — consider archiving or reweaving]
      - notes/early-claim.md (45d, 1 link) [WARN]
      - notes/setupial-thought.md (38d, 1 link) [WARN]
      - notes/first-draft.md (31d, 0 links) [WARN]
    Recommendation: run /reweave on these notes to find connections, or archive if no longer relevant

# For each topic map
for moc in {vocabulary.notes}/*.md; do
  [[ -f "$moc" ]] || continue
  # Check if this is a topic map (has type: moc in frontmatter)
  rg -q '^type: moc' "$moc" || continue

  moc_name=$(basename "$moc" .md)

  # Count notes linking to this topic map
  note_count=$(rg -l "\[\[$moc_name\]\]" {vocabulary.notes}/ --glob '*.md' | grep -v "$moc" | wc -l | tr -d ' ')

  echo "$moc_name: $note_count notes"
done

# Check for bare links in topic map Core Ideas (links without context phrases)
for moc in {vocabulary.notes}/*.md; do
  rg -q '^type: moc' "$moc" || continue
  # Look for "- [[note]]" without " — " context
  rg '^\s*- \[\[' "$moc" | grep -v ' — ' | grep -v '^\s*- \[\[.*\]\].*—'
done

[8] MOC Coherence ................ WARN
    3 topic maps checked:
      - knowledge-work: 28 notes [PASS]
      - graph-structure: 52 notes [WARN — oversized, consider splitting]
        3 bare links without context phrases
      - agent-cognition: 3 notes [WARN — underdeveloped, consider merging]
    Recommendation: split graph-structure into sub-topic-maps; add context phrases to bare links