SQLite · For researchers

Start, structure, and grow a persistent research wiki indexed in pro-workflow's SQLite knowledge base.

rohitg00/pro-workflow

Set up and maintain a lightweight, file-based knowledge graph of the repo — entities, typed relations, decisions, gotchas — so agents load context fast instead of re-exploring the codebase every…

gnomeria/usbtree

Query pro-workflow wikis via SQLite FTS5 BM25 retrieval. An agent skill from rohitg00/pro-workflow.

rohitg00/pro-workflow

Define extraction schema, extract study data from full texts, and store it in a structured database for meta-analysis.

htlin222/meta-pipe

Manages the Morphir knowledge base under kb/ — OKF bundles and concept documents.

finos/morphir

Use CortexDB for local-first AI memory, vector search, RAG, knowledge graphs, SPARQL/RDFS/SHACL, corpus-to-graph workflows, and MCP/tool calling.

liliang-cn/cortexdb

BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.

ai4nucleome/BioMaster

A skill your agent uses when the user wants to import papers from Endnote XML/RIS, Zotero Web API or local SQLite, attach PDFs, match PDFs to records, or supplement records with PDF content.

ZimoLiao/scholaraio

Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO.

FreedomIntelligence/OpenClaw-Medical-Skills

从 SQLite、JSONL、日志或历史会话中研究行为模式，核验数据质量、统计口径与案例证据， 产出可复现的分析和可验证的改进候选。用于分析历史数据、比较行为变化、提炼系统或用户 使用规律；单纯文章润色不需要启动研究流程。

KonghaYao/peri

A multi-source clinical-trials intelligence system — aggregates, normalizes, and analyzes trials across ClinicalTrials.gov, EU CTIS, and biomedical sources, with an offline SQLite engine no…

mvanhorn/printing-press-library

Agent-native Parallel web research with a local SQLite memory no other Parallel CLI keeps.

mvanhorn/printing-press-library

Your entire Zotero research library, searchable offline — version-based incremental sync into SQLite with full-text search no other Zotero tool has.

mvanhorn/printing-press-library

Builds or updates the code knowledge graph via tree-sitter AST and SQLite.

athola/claude-night-market

Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers.

bioMate-AI/biomate-bioconductor-kb