Search
Docker · Bioinformatics
Skills
Sort:BestMost starsTrending todayTrending this weekTrending this monthNewestRecently updatedName
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Generate sashimi-style genome visualization plots (coverage, line, heatmap, IGV read-by-read, HiC, circRNA, motif) from BAM/bigWig/depth/HiC inputs. | ygidtu/ | 109 | — | ~1.9k | Automated safety check: Pass | BSD-3-Clause | 15 days ago |
| 2 | Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline. | ClawBio/ | 1.2k | 3 repos | ~413 | Automated safety check: Pass | MIT | 2 days ago |
| 3 | Generate and analyze DNA sequences using NVIDIA's Evo 2 BioNeMo NIM microservice. | NVIDIA/ | 3.6k | 1 repo | ~2.4k | Automated safety check: Notes | Apache-2.0 | 2 days ago |
| 4 | Deep learning-based variant calling with Google DeepVariant. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 5 | Designs pegRNAs and nicking guides for prime editing (PE) -- choosing the nick/strand, tuning the primer-binding site (PBS) and reverse-transcription template (RTT) as a per-locus panel, selecting… | GPTomics/ | 1.2k | 1 repo | ~4.7k | Automated safety check: Pass | MIT | 1 mo ago |
| 6 | Runs and configures curated nf-core community Nextflow pipelines (rnaseq, sarek, atacseq, methylseq, ampliseq, taxprofiler, fetchngs) reproducibly, pinning the pipeline revision with -r and… | GPTomics/ | 1.2k | 1 repo | ~4.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 7 | Authors bioinformatics pipelines in WDL (Workflow Description Language) run by Cromwell or miniwdl, targeting the GATK/Broad and Terra/AnVIL/BioData Catalyst cloud ecosystem, with tasks, workflows… | GPTomics/ | 1.2k | 1 repo | ~3.5k | Automated safety check: Pass | MIT | 1 mo ago |
